Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20400

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20390 and ABIE40_RS20395 are separated by 20 nucleotidesABIE40_RS20395 and ABIE40_RS20400 are separated by 2 nucleotidesABIE40_RS20400 and ABIE40_RS20405 are separated by 12 nucleotides ABIE40_RS20390: ABIE40_RS20390 - ABC transporter ATP-binding protein, at 183,313 to 184,098 _RS20390 ABIE40_RS20395: ABIE40_RS20395 - histidine utilization repressor, at 184,119 to 184,820 _RS20395 ABIE40_RS20400: ABIE40_RS20400 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 184,823 to 185,635 _RS20400 ABIE40_RS20405: ABIE40_RS20405 - FAD-dependent oxidoreductase, at 185,648 to 186,872 _RS20405 Position (kb) 184 185 186Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 183.961 kb on - strand, within ABIE40_RS20390at 183.961 kb on - strand, within ABIE40_RS20390at 184.003 kb on + strand, within ABIE40_RS20390at 184.003 kb on + strand, within ABIE40_RS20390at 184.003 kb on + strand, within ABIE40_RS20390at 184.003 kb on + strand, within ABIE40_RS20390at 184.004 kb on - strand, within ABIE40_RS20390at 184.224 kb on + strand, within ABIE40_RS20395at 184.224 kb on + strand, within ABIE40_RS20395at 184.224 kb on + strand, within ABIE40_RS20395at 184.224 kb on + strand, within ABIE40_RS20395at 184.224 kb on + strand, within ABIE40_RS20395at 184.225 kb on - strand, within ABIE40_RS20395at 184.311 kb on + strand, within ABIE40_RS20395at 184.311 kb on + strand, within ABIE40_RS20395at 184.311 kb on + strand, within ABIE40_RS20395at 184.311 kb on + strand, within ABIE40_RS20395at 184.311 kb on + strand, within ABIE40_RS20395at 184.312 kb on - strand, within ABIE40_RS20395at 184.312 kb on - strand, within ABIE40_RS20395at 184.312 kb on - strand, within ABIE40_RS20395at 184.312 kb on - strand, within ABIE40_RS20395at 184.312 kb on - strand, within ABIE40_RS20395at 184.312 kb on - strand, within ABIE40_RS20395at 184.398 kb on + strand, within ABIE40_RS20395at 184.771 kb on - strandat 184.771 kb on - strandat 184.771 kb on - strandat 184.824 kb on + strandat 184.824 kb on + strandat 184.825 kb on - strandat 184.825 kb on - strandat 184.825 kb on - strandat 184.825 kb on - strandat 184.825 kb on - strandat 184.825 kb on - strandat 184.980 kb on + strand, within ABIE40_RS20400at 184.981 kb on - strand, within ABIE40_RS20400at 184.981 kb on - strand, within ABIE40_RS20400at 184.981 kb on - strand, within ABIE40_RS20400at 185.001 kb on + strand, within ABIE40_RS20400at 185.002 kb on - strand, within ABIE40_RS20400at 185.065 kb on - strand, within ABIE40_RS20400at 185.356 kb on - strand, within ABIE40_RS20400at 185.356 kb on - strand, within ABIE40_RS20400at 185.403 kb on + strand, within ABIE40_RS20400at 185.421 kb on + strand, within ABIE40_RS20400at 185.421 kb on + strand, within ABIE40_RS20400at 185.421 kb on + strand, within ABIE40_RS20400at 185.422 kb on - strand, within ABIE40_RS20400at 185.430 kb on + strand, within ABIE40_RS20400at 185.430 kb on + strand, within ABIE40_RS20400at 185.572 kb on + strandat 185.584 kb on + strandat 185.623 kb on + strandat 185.623 kb on + strandat 185.623 kb on + strandat 185.623 kb on + strandat 185.624 kb on - strandat 185.624 kb on - strandat 185.904 kb on + strand, within ABIE40_RS20405at 185.904 kb on + strand, within ABIE40_RS20405at 185.904 kb on + strand, within ABIE40_RS20405at 185.904 kb on + strand, within ABIE40_RS20405at 185.904 kb on + strand, within ABIE40_RS20405at 185.904 kb on + strand, within ABIE40_RS20405at 185.904 kb on + strand, within ABIE40_RS20405at 185.904 kb on + strand, within ABIE40_RS20405at 185.905 kb on - strand, within ABIE40_RS20405at 185.905 kb on - strand, within ABIE40_RS20405at 185.959 kb on + strand, within ABIE40_RS20405at 185.960 kb on - strand, within ABIE40_RS20405at 185.960 kb on - strand, within ABIE40_RS20405at 186.070 kb on - strand, within ABIE40_RS20405at 186.070 kb on - strand, within ABIE40_RS20405at 186.184 kb on + strand, within ABIE40_RS20405at 186.184 kb on + strand, within ABIE40_RS20405at 186.184 kb on + strand, within ABIE40_RS20405at 186.185 kb on - strand, within ABIE40_RS20405at 186.579 kb on + strand, within ABIE40_RS20405at 186.579 kb on + strand, within ABIE40_RS20405at 186.580 kb on - strand, within ABIE40_RS20405

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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183,961 - ABIE40_RS20390 0.82 -0.4
183,961 - ABIE40_RS20390 0.82 -2.0
184,003 + ABIE40_RS20390 0.88 +1.7
184,003 + ABIE40_RS20390 0.88 -1.7
184,003 + ABIE40_RS20390 0.88 +0.2
184,003 + ABIE40_RS20390 0.88 +0.7
184,004 - ABIE40_RS20390 0.88 +0.2
184,224 + ABIE40_RS20395 0.15 -3.0
184,224 + ABIE40_RS20395 0.15 +2.6
184,224 + ABIE40_RS20395 0.15 +0.7
184,224 + ABIE40_RS20395 0.15 -0.4
184,224 + ABIE40_RS20395 0.15 -1.3
184,225 - ABIE40_RS20395 0.15 -0.8
184,311 + ABIE40_RS20395 0.27 +0.7
184,311 + ABIE40_RS20395 0.27 -0.9
184,311 + ABIE40_RS20395 0.27 -0.8
184,311 + ABIE40_RS20395 0.27 -0.8
184,311 + ABIE40_RS20395 0.27 -2.1
184,312 - ABIE40_RS20395 0.27 +1.3
184,312 - ABIE40_RS20395 0.27 +0.9
184,312 - ABIE40_RS20395 0.27 -0.0
184,312 - ABIE40_RS20395 0.27 +0.3
184,312 - ABIE40_RS20395 0.27 -1.0
184,312 - ABIE40_RS20395 0.27 -3.0
184,398 + ABIE40_RS20395 0.40 +0.3
184,771 - +0.5
184,771 - -0.3
184,771 - -2.5
184,824 + +0.5
184,824 + -0.1
184,825 - +0.6
184,825 - -0.3
184,825 - +0.2
184,825 - +0.9
184,825 - -2.6
184,825 - -1.8
184,980 + ABIE40_RS20400 0.19 -2.3
184,981 - ABIE40_RS20400 0.19 -0.3
184,981 - ABIE40_RS20400 0.19 +1.8
184,981 - ABIE40_RS20400 0.19 +0.1
185,001 + ABIE40_RS20400 0.22 -2.7
185,002 - ABIE40_RS20400 0.22 +0.7
185,065 - ABIE40_RS20400 0.30 +0.6
185,356 - ABIE40_RS20400 0.66 +1.0
185,356 - ABIE40_RS20400 0.66 -0.2
185,403 + ABIE40_RS20400 0.71 -0.2
185,421 + ABIE40_RS20400 0.74 +0.6
185,421 + ABIE40_RS20400 0.74 -3.5
185,421 + ABIE40_RS20400 0.74 +3.1
185,422 - ABIE40_RS20400 0.74 +0.1
185,430 + ABIE40_RS20400 0.75 -1.3
185,430 + ABIE40_RS20400 0.75 -3.0
185,572 + -0.5
185,584 + +0.3
185,623 + +1.6
185,623 + -3.8
185,623 + -0.3
185,623 + -0.0
185,624 - -2.3
185,624 - -2.0
185,904 + ABIE40_RS20405 0.21 +1.0
185,904 + ABIE40_RS20405 0.21 -1.5
185,904 + ABIE40_RS20405 0.21 -3.0
185,904 + ABIE40_RS20405 0.21 +1.9
185,904 + ABIE40_RS20405 0.21 -1.7
185,904 + ABIE40_RS20405 0.21 -0.0
185,904 + ABIE40_RS20405 0.21 -2.4
185,904 + ABIE40_RS20405 0.21 -0.6
185,905 - ABIE40_RS20405 0.21 +0.5
185,905 - ABIE40_RS20405 0.21 -0.6
185,959 + ABIE40_RS20405 0.25 -0.4
185,960 - ABIE40_RS20405 0.25 -0.4
185,960 - ABIE40_RS20405 0.25 -1.2
186,070 - ABIE40_RS20405 0.34 +1.3
186,070 - ABIE40_RS20405 0.34 +0.9
186,184 + ABIE40_RS20405 0.44 +3.8
186,184 + ABIE40_RS20405 0.44 -0.6
186,184 + ABIE40_RS20405 0.44 -0.1
186,185 - ABIE40_RS20405 0.44 -1.0
186,579 + ABIE40_RS20405 0.76 -1.0
186,579 + ABIE40_RS20405 0.76 -2.0
186,580 - ABIE40_RS20405 0.76 +0.2

Or see this region's nucleotide sequence