Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS16645

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
3,315,762	+		ABIE40_RS16640	0.19	+0.9
3,315,762	+		ABIE40_RS16640	0.19	-0.1
3,315,762	+		ABIE40_RS16640	0.19	+0.5
3,315,763	-		ABIE40_RS16640	0.19	+1.6
3,315,763	-		ABIE40_RS16640	0.19	-1.6
3,315,763	-		ABIE40_RS16640	0.19	-0.9
3,315,763	-		ABIE40_RS16640	0.19	+0.4
3,315,802	+		ABIE40_RS16640	0.23	-0.2
3,315,802	+		ABIE40_RS16640	0.23	-1.6
3,315,802	+		ABIE40_RS16640	0.23	-1.7
3,315,802	+		ABIE40_RS16640	0.23	-3.0
3,315,803	-		ABIE40_RS16640	0.23	-2.8
3,315,811	+		ABIE40_RS16640	0.24	+0.1
3,315,811	+		ABIE40_RS16640	0.24	+1.2
3,315,812	-		ABIE40_RS16640	0.24	-3.7
3,315,981	+		ABIE40_RS16640	0.42	-1.1
3,315,981	+		ABIE40_RS16640	0.42	+0.2
3,315,982	-		ABIE40_RS16640	0.42	-2.5
3,315,982	-		ABIE40_RS16640	0.42	+1.1
3,315,984	+		ABIE40_RS16640	0.42	+0.7
3,315,984	+		ABIE40_RS16640	0.42	+0.1
3,315,984	+		ABIE40_RS16640	0.42	+2.1
3,315,984	+		ABIE40_RS16640	0.42	-3.3
3,315,984	+		ABIE40_RS16640	0.42	-0.4
3,315,984	+		ABIE40_RS16640	0.42	+1.6
3,315,984	+		ABIE40_RS16640	0.42	-1.0
3,315,985	-		ABIE40_RS16640	0.42	-2.9
3,315,985	-		ABIE40_RS16640	0.42	-2.7
3,315,985	-		ABIE40_RS16640	0.42	+0.9
3,315,985	-		ABIE40_RS16640	0.42	-1.6
3,315,991	-		ABIE40_RS16640	0.43	+0.8
3,316,024	-		ABIE40_RS16640	0.46	-0.3
3,316,135	-		ABIE40_RS16640	0.58	+0.6
3,316,258	+		ABIE40_RS16640	0.71	-2.6
3,316,258	+		ABIE40_RS16640	0.71	-0.2
3,316,259	-		ABIE40_RS16640	0.71	+1.6
3,316,311	+		ABIE40_RS16640	0.76	-0.4
3,316,312	-		ABIE40_RS16640	0.76	-3.2
3,316,505	+				-4.4
3,316,505	+				-1.0
3,316,505	+				+0.4
3,316,506	-				-0.4
3,316,570	+				+1.0
3,316,571	-				-1.7
3,316,571	-				-0.3
3,316,634	+				-4.6
3,316,814	+		ABIE40_RS16645	0.24	-5.2
3,316,814	+		ABIE40_RS16645	0.24	-4.4
3,316,815	-		ABIE40_RS16645	0.24	-4.3
3,316,987	+		ABIE40_RS16645	0.41	-5.1
3,316,988	-		ABIE40_RS16645	0.41	-4.1
3,316,988	-		ABIE40_RS16645	0.41	+0.5
3,316,988	-		ABIE40_RS16645	0.41	-1.9
3,316,988	-		ABIE40_RS16645	0.41	-0.2
3,317,045	+		ABIE40_RS16645	0.47	-3.8
3,317,046	-		ABIE40_RS16645	0.47	-4.0
3,317,095	+		ABIE40_RS16645	0.51	-2.5
3,317,095	+		ABIE40_RS16645	0.51	-3.7
3,317,095	+		ABIE40_RS16645	0.51	-3.1
3,317,096	-		ABIE40_RS16645	0.52	-2.5
3,317,096	-		ABIE40_RS16645	0.52	-2.0
3,317,114	-		ABIE40_RS16645	0.53	-2.4
3,317,171	+		ABIE40_RS16645	0.59	+0.5
3,317,172	-		ABIE40_RS16645	0.59	-4.6
3,317,290	+		ABIE40_RS16645	0.70	-3.6
3,317,291	-		ABIE40_RS16645	0.71	-1.5
3,317,291	-		ABIE40_RS16645	0.71	-3.2
3,317,291	-		ABIE40_RS16645	0.71	-3.6
3,317,362	+		ABIE40_RS16645	0.78	-4.2
3,317,441	+		ABIE40_RS16645	0.85	-3.5
3,317,442	-		ABIE40_RS16645	0.85	-4.1
3,317,443	+		ABIE40_RS16645	0.85	-4.1
3,317,443	+		ABIE40_RS16645	0.85	-2.1
3,317,443	+		ABIE40_RS16645	0.85	-3.8
3,317,443	+		ABIE40_RS16645	0.85	-1.2
3,317,443	+		ABIE40_RS16645	0.85	-2.0
3,317,443	+		ABIE40_RS16645	0.85	+0.5
3,317,443	+		ABIE40_RS16645	0.85	-2.8
3,317,443	+		ABIE40_RS16645	0.85	-1.5
3,317,443	+		ABIE40_RS16645	0.85	-2.4
3,317,443	+		ABIE40_RS16645	0.85	-2.9
3,317,443	+		ABIE40_RS16645	0.85	-0.6
3,317,444	-		ABIE40_RS16645	0.86	-4.7
3,317,444	-		ABIE40_RS16645	0.86	-3.6
3,317,444	-		ABIE40_RS16645	0.86	-4.5
3,317,444	-		ABIE40_RS16645	0.86	-4.2
3,317,444	-		ABIE40_RS16645	0.86	-3.5
3,317,444	-		ABIE40_RS16645	0.86	-2.3
3,317,444	-		ABIE40_RS16645	0.86	-4.1
3,317,444	-		ABIE40_RS16645	0.86	-1.2
3,317,444	-		ABIE40_RS16645	0.86	+0.1
3,317,444	-		ABIE40_RS16645	0.86	-0.9
3,317,444	-		ABIE40_RS16645	0.86	-3.4
3,317,444	-		ABIE40_RS16645	0.86	-3.3
3,317,444	-		ABIE40_RS16645	0.86	-4.4
3,317,444	-		ABIE40_RS16645	0.86	-1.5
3,317,444	-		ABIE40_RS16645	0.86	-1.6
3,317,444	-		ABIE40_RS16645	0.86	-4.0
3,317,444	-		ABIE40_RS16645	0.86	-2.6
3,317,444	-		ABIE40_RS16645	0.86	-5.6
3,317,444	-		ABIE40_RS16645	0.86	-3.4
3,317,444	-		ABIE40_RS16645	0.86	-1.0
3,317,444	-		ABIE40_RS16645	0.86	-5.0
3,317,447	+		ABIE40_RS16645	0.86	-3.8
3,317,447	+		ABIE40_RS16645	0.86	-3.5
3,317,448	-		ABIE40_RS16645	0.86	-1.3
3,317,448	-		ABIE40_RS16645	0.86	-5.0
3,317,448	-		ABIE40_RS16645	0.86	-3.5
3,317,448	-		ABIE40_RS16645	0.86	+0.5
3,317,448	-		ABIE40_RS16645	0.86	-4.9
3,317,448	-		ABIE40_RS16645	0.86	-2.3
3,317,448	-		ABIE40_RS16645	0.86	-3.4
3,317,448	-		ABIE40_RS16645	0.86	-0.9
3,317,448	-		ABIE40_RS16645	0.86	-3.4
3,317,449	+		ABIE40_RS16645	0.86	-1.7
3,317,449	+		ABIE40_RS16645	0.86	+0.5
3,317,449	+		ABIE40_RS16645	0.86	-3.9
3,317,449	+		ABIE40_RS16645	0.86	-1.3
3,317,450	-		ABIE40_RS16645	0.86	-3.0
3,317,450	-		ABIE40_RS16645	0.86	-3.7
3,317,450	-		ABIE40_RS16645	0.86	-5.6
3,317,450	-		ABIE40_RS16645	0.86	-5.2
3,317,546	+				-1.0
3,317,632	-				+0.1
3,317,632	-				-2.9
3,317,657	-				-2.6
3,317,669	+				-0.7
3,317,677	+				-0.9
3,317,677	+				-2.0
3,317,715	-				-4.3
3,317,715	-				-0.9
3,317,789	-		ABIE40_RS16650	0.15	-1.5
3,317,895	-		ABIE40_RS16650	0.35	-3.2
3,317,895	-		ABIE40_RS16650	0.35	+0.6
3,318,074	+		ABIE40_RS16650	0.70	-2.4
3,318,074	+		ABIE40_RS16650	0.70	+1.2
3,318,075	-		ABIE40_RS16650	0.71	+1.8
3,318,075	-		ABIE40_RS16650	0.71	+1.5
3,318,161	+		ABIE40_RS16650	0.87	+1.0
3,318,162	+		ABIE40_RS16650	0.88	+0.2
3,318,163	-		ABIE40_RS16650	0.88	+0.3
3,318,163	-		ABIE40_RS16650	0.88	+0.1
3,318,163	-		ABIE40_RS16650	0.88	-0.2
3,318,163	-		ABIE40_RS16650	0.88	-0.1
3,318,163	-		ABIE40_RS16650	0.88	+0.6
3,318,163	-		ABIE40_RS16650	0.88	-1.2
3,318,163	-		ABIE40_RS16650	0.88	-1.2
3,318,165	-		ABIE40_RS16650	0.88	-0.8
3,318,243	-				+0.3
3,318,250	+				+1.8
3,318,251	-				-0.7
3,318,251	-				-1.0
3,318,251	-				-2.5
3,318,275	+				+0.3
3,318,276	-				-1.0
3,318,315	-				-3.7
3,318,377	+				-0.2
3,318,377	+				-0.7
3,318,378	-		ABIE40_RS16655	0.10	-1.8
3,318,378	-		ABIE40_RS16655	0.10	-3.8
3,318,462	+		ABIE40_RS16655	0.21	-2.9
3,318,463	-		ABIE40_RS16655	0.21	-3.4
3,318,534	+		ABIE40_RS16655	0.30	+0.1
3,318,534	+		ABIE40_RS16655	0.30	-4.8
3,318,534	+		ABIE40_RS16655	0.30	-1.3
3,318,534	+		ABIE40_RS16655	0.30	-1.6
3,318,534	+		ABIE40_RS16655	0.30	-1.6
3,318,535	-		ABIE40_RS16655	0.30	-1.1
3,318,535	-		ABIE40_RS16655	0.30	-3.3
3,318,535	-		ABIE40_RS16655	0.30	-3.4
3,318,541	-		ABIE40_RS16655	0.31	-1.2
3,318,565	+		ABIE40_RS16655	0.34	-0.2
3,318,565	+		ABIE40_RS16655	0.34	-2.0
3,318,566	-		ABIE40_RS16655	0.34	+2.1
3,318,566	-		ABIE40_RS16655	0.34	-1.0