Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS13910

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
2,712,805	+				-0.9
2,712,806	-				+2.1
2,712,806	-				+0.7
2,712,806	-				+1.1
2,712,806	-				-2.0
2,713,355	+		ABIE40_RS13905	0.76	-0.5
2,713,355	+		ABIE40_RS13905	0.76	-0.9
2,713,556	+				-0.9
2,713,596	-				-0.9
2,713,686	+				+1.3
2,713,687	-				-0.5
2,713,702	+				-2.0
2,713,725	+				+0.5
2,713,725	+				-2.0
2,713,726	-				-1.1
2,713,773	+				+2.8
2,713,801	+				-2.7
2,713,801	+				-0.8
2,713,801	+				+0.3
2,713,802	-				-0.3
2,713,802	-				-3.0
2,713,802	-				-1.1
2,713,802	-				-0.5
2,713,802	-				-0.7
2,713,802	-				+0.3
2,713,802	-				-2.0
2,713,802	-				-2.9
2,713,803	+				+2.5
2,713,803	+				-0.8
2,713,803	+				+0.3
2,713,804	-				-2.0
2,713,804	-				+1.1
2,713,804	-				+2.2
2,713,899	+				+0.7
2,713,899	+				+1.1
2,713,899	+				-2.2
2,713,899	+				-3.9
2,713,900	-				+0.5
2,713,900	-				-0.9
2,713,900	-				-0.3
2,713,900	-				+0.5
2,713,900	-				-0.4
2,713,900	-				-1.6
2,713,903	-				-2.1
2,713,903	-				+0.1
2,713,920	+				-0.8
2,713,920	+				+1.8
2,713,921	-				-1.6
2,713,921	-				+1.7
2,714,073	+		ABIE40_RS13910	0.15	-2.8
2,714,073	+		ABIE40_RS13910	0.15	-1.5
2,714,073	+		ABIE40_RS13910	0.15	-1.0
2,714,074	-		ABIE40_RS13910	0.15	-2.2
2,714,074	-		ABIE40_RS13910	0.15	-2.1
2,714,074	-		ABIE40_RS13910	0.15	+1.2
2,714,074	-		ABIE40_RS13910	0.15	+2.7
2,714,164	+		ABIE40_RS13910	0.18	-0.3
2,714,164	+		ABIE40_RS13910	0.18	+4.3
2,714,165	-		ABIE40_RS13910	0.18	+1.1
2,714,217	+		ABIE40_RS13910	0.20	+1.9
2,714,218	-		ABIE40_RS13910	0.20	+0.4
2,714,247	+		ABIE40_RS13910	0.22	+2.3
2,714,247	+		ABIE40_RS13910	0.22	-0.7
2,714,247	+		ABIE40_RS13910	0.22	-1.0
2,714,247	+		ABIE40_RS13910	0.22	+0.1
2,714,247	+		ABIE40_RS13910	0.22	-3.2
2,714,247	+		ABIE40_RS13910	0.22	-1.2
2,714,247	+		ABIE40_RS13910	0.22	-0.0
2,714,247	+		ABIE40_RS13910	0.22	-2.5
2,714,247	+		ABIE40_RS13910	0.22	+1.1
2,714,248	-		ABIE40_RS13910	0.22	+1.4
2,714,248	-		ABIE40_RS13910	0.22	+2.1
2,714,248	-		ABIE40_RS13910	0.22	+0.5
2,714,248	-		ABIE40_RS13910	0.22	-2.0
2,714,248	-		ABIE40_RS13910	0.22	-1.1
2,714,266	-		ABIE40_RS13910	0.22	+0.2
2,714,323	-		ABIE40_RS13910	0.25	-3.6
2,714,323	-		ABIE40_RS13910	0.25	+0.2
2,714,400	+		ABIE40_RS13910	0.27	-3.9
2,714,401	-		ABIE40_RS13910	0.27	+2.1
2,714,401	-		ABIE40_RS13910	0.27	-2.7
2,714,442	+		ABIE40_RS13910	0.29	-3.7
2,714,442	+		ABIE40_RS13910	0.29	-2.6
2,714,442	+		ABIE40_RS13910	0.29	+1.3
2,714,442	+		ABIE40_RS13910	0.29	+0.8
2,714,443	-		ABIE40_RS13910	0.29	-2.0
2,714,443	-		ABIE40_RS13910	0.29	+0.7
2,714,443	-		ABIE40_RS13910	0.29	-1.3
2,714,443	-		ABIE40_RS13910	0.29	-4.2
2,714,448	+		ABIE40_RS13910	0.29	-0.6
2,714,448	+		ABIE40_RS13910	0.29	-0.9
2,714,449	-		ABIE40_RS13910	0.29	-4.5
2,714,449	-		ABIE40_RS13910	0.29	+0.2
2,714,449	-		ABIE40_RS13910	0.29	+0.1
2,714,449	-		ABIE40_RS13910	0.29	-2.2
2,714,490	+		ABIE40_RS13910	0.31	+2.0
2,714,490	+		ABIE40_RS13910	0.31	-0.6
2,714,490	+		ABIE40_RS13910	0.31	-1.2
2,714,490	+		ABIE40_RS13910	0.31	-3.0
2,714,490	+		ABIE40_RS13910	0.31	+0.0
2,714,490	+		ABIE40_RS13910	0.31	+2.0
2,714,490	+		ABIE40_RS13910	0.31	-3.0
2,714,490	+		ABIE40_RS13910	0.31	-3.2
2,714,490	+		ABIE40_RS13910	0.31	-0.6
2,714,490	+		ABIE40_RS13910	0.31	+0.4
2,714,491	-		ABIE40_RS13910	0.31	-2.7
2,714,491	-		ABIE40_RS13910	0.31	-2.7
2,714,491	-		ABIE40_RS13910	0.31	+0.8
2,714,491	-		ABIE40_RS13910	0.31	-1.0
2,714,491	-		ABIE40_RS13910	0.31	-3.5
2,714,491	-		ABIE40_RS13910	0.31	-1.6
2,714,491	-		ABIE40_RS13910	0.31	-3.3
2,714,491	-		ABIE40_RS13910	0.31	-0.0
2,714,491	-		ABIE40_RS13910	0.31	-3.6
2,714,491	-		ABIE40_RS13910	0.31	-1.7
2,714,491	-		ABIE40_RS13910	0.31	-3.3
2,714,625	+		ABIE40_RS13910	0.36	+0.5
2,714,625	+		ABIE40_RS13910	0.36	-2.8
2,714,625	+		ABIE40_RS13910	0.36	+0.5
2,714,634	+		ABIE40_RS13910	0.36	+0.7
2,714,634	+		ABIE40_RS13910	0.36	-0.7
2,714,635	-		ABIE40_RS13910	0.36	-2.0
2,714,635	-		ABIE40_RS13910	0.36	+0.3
2,714,635	-		ABIE40_RS13910	0.36	-1.6
2,714,635	-		ABIE40_RS13910	0.36	-0.5
2,714,656	-		ABIE40_RS13910	0.37	-1.0
2,714,697	+		ABIE40_RS13910	0.39	-1.5
2,714,697	+		ABIE40_RS13910	0.39	+0.4
2,714,698	-		ABIE40_RS13910	0.39	+0.4
2,714,736	+		ABIE40_RS13910	0.40	-3.1
2,714,746	-		ABIE40_RS13910	0.41	-0.1
2,714,751	+		ABIE40_RS13910	0.41	-2.0
2,714,752	-		ABIE40_RS13910	0.41	-1.0
2,714,752	-		ABIE40_RS13910	0.41	-1.5
2,714,784	+		ABIE40_RS13910	0.42	+0.4
2,714,784	+		ABIE40_RS13910	0.42	-0.2
2,714,785	-		ABIE40_RS13910	0.42	-3.3
2,714,785	-		ABIE40_RS13910	0.42	+0.7
2,714,785	-		ABIE40_RS13910	0.42	+0.9
2,714,785	-		ABIE40_RS13910	0.42	-0.5
2,714,785	-		ABIE40_RS13910	0.42	-4.0
2,714,785	-		ABIE40_RS13910	0.42	-0.7
2,714,785	-		ABIE40_RS13910	0.42	+0.3
2,714,785	-		ABIE40_RS13910	0.42	+1.2
2,714,790	+		ABIE40_RS13910	0.42	-0.7
2,714,790	+		ABIE40_RS13910	0.42	-1.0
2,714,790	+		ABIE40_RS13910	0.42	-1.2
2,714,790	+		ABIE40_RS13910	0.42	+1.1
2,714,790	+		ABIE40_RS13910	0.42	-0.7
2,714,790	+		ABIE40_RS13910	0.42	+1.2
2,714,790	+		ABIE40_RS13910	0.42	-3.7
2,714,790	+		ABIE40_RS13910	0.42	-2.2
2,714,791	-		ABIE40_RS13910	0.42	-3.4
2,714,791	-		ABIE40_RS13910	0.42	+0.2
2,714,791	-		ABIE40_RS13910	0.42	-2.5
2,714,791	-		ABIE40_RS13910	0.42	-0.4
2,714,791	-		ABIE40_RS13910	0.42	+0.2
2,714,915	-		ABIE40_RS13910	0.47	-4.0
2,714,951	-		ABIE40_RS13910	0.49	+0.2
2,714,999	-		ABIE40_RS13910	0.50	+0.4
2,715,000	+		ABIE40_RS13910	0.50	+0.9
2,715,000	+		ABIE40_RS13910	0.50	+0.5
2,715,001	-		ABIE40_RS13910	0.51	-0.8
2,715,001	-		ABIE40_RS13910	0.51	+0.6
2,715,001	-		ABIE40_RS13910	0.51	+0.0
2,715,001	-		ABIE40_RS13910	0.51	-4.2
2,715,241	+		ABIE40_RS13910	0.60	+0.6
2,715,242	-		ABIE40_RS13910	0.60	+2.1
2,715,255	+		ABIE40_RS13910	0.60	+0.9
2,715,322	+		ABIE40_RS13910	0.63	+0.3
2,715,323	-		ABIE40_RS13910	0.63	+0.1
2,715,323	-		ABIE40_RS13910	0.63	-0.6
2,715,499	-		ABIE40_RS13910	0.70	+0.5
2,715,499	-		ABIE40_RS13910	0.70	-5.1
2,715,636	+		ABIE40_RS13910	0.75	-1.1
2,715,637	+		ABIE40_RS13910	0.75	-2.2
2,715,637	+		ABIE40_RS13910	0.75	-2.0
2,715,637	+		ABIE40_RS13910	0.75	-3.3
2,715,637	+		ABIE40_RS13910	0.75	+1.1
2,715,637	+		ABIE40_RS13910	0.75	-0.9
2,715,638	-		ABIE40_RS13910	0.75	-2.0
2,715,638	-		ABIE40_RS13910	0.75	+2.5
2,715,638	-		ABIE40_RS13910	0.75	-0.5
2,715,638	-		ABIE40_RS13910	0.75	+0.8
2,715,638	-		ABIE40_RS13910	0.75	-3.8
2,715,638	-		ABIE40_RS13910	0.75	-2.1
2,715,638	-		ABIE40_RS13910	0.75	-2.3
2,715,638	-		ABIE40_RS13910	0.75	+0.8
2,715,640	+		ABIE40_RS13910	0.75	-0.7
2,715,641	-		ABIE40_RS13910	0.75	+0.3
2,715,641	-		ABIE40_RS13910	0.75	+0.5
2,715,641	-		ABIE40_RS13910	0.75	+1.9
2,715,728	+		ABIE40_RS13910	0.78	-4.1
2,715,728	+		ABIE40_RS13910	0.78	-0.2
2,715,728	+		ABIE40_RS13910	0.78	-0.4
2,715,728	+		ABIE40_RS13910	0.78	-0.6
2,715,728	+		ABIE40_RS13910	0.78	+2.3
2,715,728	+		ABIE40_RS13910	0.78	+1.0
2,715,729	-		ABIE40_RS13910	0.78	+2.0
2,715,729	-		ABIE40_RS13910	0.78	+0.1
2,715,729	-		ABIE40_RS13910	0.78	+1.3
2,715,729	-		ABIE40_RS13910	0.78	-2.7
2,715,729	-		ABIE40_RS13910	0.78	-2.4
2,715,802	+		ABIE40_RS13910	0.81	-3.1
2,715,802	+		ABIE40_RS13910	0.81	+1.0
2,715,803	-		ABIE40_RS13910	0.81	+0.7
2,715,803	-		ABIE40_RS13910	0.81	-3.3
2,715,803	-		ABIE40_RS13910	0.81	+2.1
2,715,803	-		ABIE40_RS13910	0.81	-0.9
2,715,894	-		ABIE40_RS13910	0.85	-1.3
2,715,894	-		ABIE40_RS13910	0.85	-2.3
2,715,928	+		ABIE40_RS13910	0.86	+0.2
2,716,173	+				-0.0
2,716,232	+				+0.1
2,716,233	-				-2.9
2,716,233	-				-1.0
2,716,233	-				+1.0
2,716,233	-				-1.8
2,716,233	-				-1.0
2,716,233	-				-0.5
2,716,233	-				-2.5
2,716,293	-				-2.5
2,716,313	-				-1.0
2,716,325	+				-0.9
2,716,326	-				+0.5
2,716,383	-				+0.4
2,716,507	+				-1.2
2,716,508	-				-2.2
2,716,791	+				-1.9
2,716,791	+				+0.7
2,716,791	+				+0.1
2,716,791	+				-0.3
2,716,791	+				+1.5
2,716,791	+				+1.9
2,716,792	-				+0.5
2,716,792	-				-2.3
2,716,792	-				+3.2