Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS09065

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS09055 and ABIE40_RS09060 are separated by 9 nucleotidesABIE40_RS09060 and ABIE40_RS09065 are separated by 3 nucleotidesABIE40_RS09065 and ABIE40_RS09070 are separated by 74 nucleotidesABIE40_RS09070 and ABIE40_RS09075 overlap by 4 nucleotides ABIE40_RS09055: ABIE40_RS09055 - AAA family ATPase, at 1,744,541 to 1,745,113 _RS09055 ABIE40_RS09060: ABIE40_RS09060 - type II toxin-antitoxin system RatA family toxin, at 1,745,123 to 1,745,569 _RS09060 ABIE40_RS09065: ABIE40_RS09065 - hypothetical protein, at 1,745,573 to 1,745,878 _RS09065 ABIE40_RS09070: ABIE40_RS09070 - CinA family protein, at 1,745,953 to 1,746,447 _RS09070 ABIE40_RS09075: ABIE40_RS09075 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,746,444 to 1,747,664 _RS09075 Position (kb) 1745 1746Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1744.973 kb on + strand, within ABIE40_RS09055at 1744.973 kb on + strand, within ABIE40_RS09055at 1744.973 kb on + strand, within ABIE40_RS09055at 1744.973 kb on + strand, within ABIE40_RS09055at 1744.973 kb on + strand, within ABIE40_RS09055at 1744.973 kb on + strand, within ABIE40_RS09055at 1744.973 kb on + strand, within ABIE40_RS09055at 1744.973 kb on + strand, within ABIE40_RS09055at 1744.973 kb on + strand, within ABIE40_RS09055at 1744.974 kb on - strand, within ABIE40_RS09055at 1744.974 kb on - strand, within ABIE40_RS09055at 1744.974 kb on - strand, within ABIE40_RS09055at 1744.974 kb on - strand, within ABIE40_RS09055at 1744.975 kb on + strand, within ABIE40_RS09055at 1744.975 kb on + strand, within ABIE40_RS09055at 1744.975 kb on + strand, within ABIE40_RS09055at 1745.011 kb on - strand, within ABIE40_RS09055at 1745.011 kb on - strand, within ABIE40_RS09055at 1745.112 kb on - strandat 1745.112 kb on - strandat 1745.112 kb on - strandat 1745.297 kb on + strand, within ABIE40_RS09060at 1745.298 kb on - strand, within ABIE40_RS09060at 1745.298 kb on - strand, within ABIE40_RS09060at 1745.298 kb on - strand, within ABIE40_RS09060at 1745.298 kb on - strand, within ABIE40_RS09060at 1745.369 kb on + strand, within ABIE40_RS09060at 1745.369 kb on + strand, within ABIE40_RS09060at 1745.370 kb on - strand, within ABIE40_RS09060at 1745.370 kb on - strand, within ABIE40_RS09060at 1745.371 kb on + strand, within ABIE40_RS09060at 1745.372 kb on - strand, within ABIE40_RS09060at 1745.372 kb on - strand, within ABIE40_RS09060at 1745.390 kb on + strand, within ABIE40_RS09060at 1745.391 kb on - strand, within ABIE40_RS09060at 1745.457 kb on - strand, within ABIE40_RS09060at 1745.558 kb on + strandat 1745.558 kb on + strandat 1745.559 kb on - strandat 1745.619 kb on + strand, within ABIE40_RS09065at 1745.619 kb on + strand, within ABIE40_RS09065at 1745.619 kb on + strand, within ABIE40_RS09065at 1745.619 kb on + strand, within ABIE40_RS09065at 1745.619 kb on + strand, within ABIE40_RS09065at 1745.620 kb on - strand, within ABIE40_RS09065at 1745.620 kb on - strand, within ABIE40_RS09065at 1745.620 kb on - strand, within ABIE40_RS09065at 1745.676 kb on + strand, within ABIE40_RS09065at 1745.676 kb on + strand, within ABIE40_RS09065at 1745.677 kb on - strand, within ABIE40_RS09065at 1745.677 kb on - strand, within ABIE40_RS09065at 1745.733 kb on + strand, within ABIE40_RS09065at 1745.733 kb on + strand, within ABIE40_RS09065at 1745.733 kb on + strand, within ABIE40_RS09065at 1745.734 kb on - strand, within ABIE40_RS09065at 1745.796 kb on + strand, within ABIE40_RS09065at 1745.796 kb on + strand, within ABIE40_RS09065at 1745.796 kb on + strand, within ABIE40_RS09065at 1745.796 kb on + strand, within ABIE40_RS09065at 1745.797 kb on - strand, within ABIE40_RS09065at 1745.797 kb on - strand, within ABIE40_RS09065at 1745.797 kb on - strand, within ABIE40_RS09065at 1745.797 kb on - strand, within ABIE40_RS09065at 1745.797 kb on - strand, within ABIE40_RS09065at 1745.805 kb on + strand, within ABIE40_RS09065at 1745.806 kb on - strand, within ABIE40_RS09065at 1745.806 kb on - strand, within ABIE40_RS09065at 1745.806 kb on - strand, within ABIE40_RS09065at 1745.871 kb on + strandat 1745.871 kb on + strandat 1745.871 kb on + strandat 1745.871 kb on + strandat 1745.871 kb on + strandat 1745.872 kb on - strandat 1745.872 kb on - strandat 1745.872 kb on - strandat 1745.954 kb on + strandat 1745.954 kb on + strandat 1745.954 kb on + strandat 1745.954 kb on + strandat 1745.954 kb on + strandat 1745.954 kb on + strandat 1745.955 kb on - strandat 1745.955 kb on - strandat 1745.955 kb on - strandat 1745.955 kb on - strandat 1745.955 kb on - strandat 1746.029 kb on + strand, within ABIE40_RS09070at 1746.029 kb on + strand, within ABIE40_RS09070at 1746.029 kb on + strand, within ABIE40_RS09070at 1746.030 kb on - strand, within ABIE40_RS09070at 1746.273 kb on + strand, within ABIE40_RS09070at 1746.273 kb on + strand, within ABIE40_RS09070at 1746.273 kb on + strand, within ABIE40_RS09070at 1746.274 kb on - strand, within ABIE40_RS09070at 1746.274 kb on - strand, within ABIE40_RS09070at 1746.275 kb on + strand, within ABIE40_RS09070at 1746.275 kb on + strand, within ABIE40_RS09070at 1746.275 kb on + strand, within ABIE40_RS09070at 1746.276 kb on - strand, within ABIE40_RS09070at 1746.276 kb on - strand, within ABIE40_RS09070at 1746.276 kb on - strand, within ABIE40_RS09070at 1746.276 kb on - strand, within ABIE40_RS09070

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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1,744,973 + ABIE40_RS09055 0.75 -4.0
1,744,973 + ABIE40_RS09055 0.75 -0.0
1,744,973 + ABIE40_RS09055 0.75 +1.2
1,744,973 + ABIE40_RS09055 0.75 -1.9
1,744,973 + ABIE40_RS09055 0.75 -2.4
1,744,973 + ABIE40_RS09055 0.75 -0.3
1,744,973 + ABIE40_RS09055 0.75 -0.6
1,744,973 + ABIE40_RS09055 0.75 -3.5
1,744,973 + ABIE40_RS09055 0.75 +4.8
1,744,974 - ABIE40_RS09055 0.76 -2.2
1,744,974 - ABIE40_RS09055 0.76 +0.3
1,744,974 - ABIE40_RS09055 0.76 +0.7
1,744,974 - ABIE40_RS09055 0.76 +1.2
1,744,975 + ABIE40_RS09055 0.76 +0.7
1,744,975 + ABIE40_RS09055 0.76 +0.1
1,744,975 + ABIE40_RS09055 0.76 -1.8
1,745,011 - ABIE40_RS09055 0.82 +1.8
1,745,011 - ABIE40_RS09055 0.82 -3.4
1,745,112 - +2.2
1,745,112 - -0.9
1,745,112 - +1.7
1,745,297 + ABIE40_RS09060 0.39 -2.4
1,745,298 - ABIE40_RS09060 0.39 -1.8
1,745,298 - ABIE40_RS09060 0.39 +2.0
1,745,298 - ABIE40_RS09060 0.39 +0.2
1,745,298 - ABIE40_RS09060 0.39 -2.5
1,745,369 + ABIE40_RS09060 0.55 +0.3
1,745,369 + ABIE40_RS09060 0.55 +0.3
1,745,370 - ABIE40_RS09060 0.55 +1.2
1,745,370 - ABIE40_RS09060 0.55 +0.2
1,745,371 + ABIE40_RS09060 0.55 -1.6
1,745,372 - ABIE40_RS09060 0.56 +0.2
1,745,372 - ABIE40_RS09060 0.56 +2.6
1,745,390 + ABIE40_RS09060 0.60 +1.6
1,745,391 - ABIE40_RS09060 0.60 -0.3
1,745,457 - ABIE40_RS09060 0.75 -0.6
1,745,558 + -0.6
1,745,558 + +1.5
1,745,559 - -0.6
1,745,619 + ABIE40_RS09065 0.15 +0.4
1,745,619 + ABIE40_RS09065 0.15 +0.6
1,745,619 + ABIE40_RS09065 0.15 +1.2
1,745,619 + ABIE40_RS09065 0.15 +2.2
1,745,619 + ABIE40_RS09065 0.15 +1.1
1,745,620 - ABIE40_RS09065 0.15 +2.2
1,745,620 - ABIE40_RS09065 0.15 +1.1
1,745,620 - ABIE40_RS09065 0.15 -2.0
1,745,676 + ABIE40_RS09065 0.34 +1.2
1,745,676 + ABIE40_RS09065 0.34 -1.3
1,745,677 - ABIE40_RS09065 0.34 +0.0
1,745,677 - ABIE40_RS09065 0.34 +1.2
1,745,733 + ABIE40_RS09065 0.52 +1.4
1,745,733 + ABIE40_RS09065 0.52 +1.2
1,745,733 + ABIE40_RS09065 0.52 -0.5
1,745,734 - ABIE40_RS09065 0.53 +0.4
1,745,796 + ABIE40_RS09065 0.73 +0.9
1,745,796 + ABIE40_RS09065 0.73 +0.5
1,745,796 + ABIE40_RS09065 0.73 -2.0
1,745,796 + ABIE40_RS09065 0.73 +0.1
1,745,797 - ABIE40_RS09065 0.73 -2.9
1,745,797 - ABIE40_RS09065 0.73 +0.1
1,745,797 - ABIE40_RS09065 0.73 +1.0
1,745,797 - ABIE40_RS09065 0.73 +1.7
1,745,797 - ABIE40_RS09065 0.73 -0.3
1,745,805 + ABIE40_RS09065 0.76 -1.6
1,745,806 - ABIE40_RS09065 0.76 -1.9
1,745,806 - ABIE40_RS09065 0.76 +2.2
1,745,806 - ABIE40_RS09065 0.76 +2.0
1,745,871 + -1.1
1,745,871 + +2.7
1,745,871 + +0.3
1,745,871 + -0.3
1,745,871 + +1.2
1,745,872 - -0.4
1,745,872 - -2.9
1,745,872 - -0.4
1,745,954 + +1.0
1,745,954 + -2.4
1,745,954 + -0.6
1,745,954 + +2.7
1,745,954 + +0.4
1,745,954 + +0.9
1,745,955 - +2.8
1,745,955 - -0.7
1,745,955 - +0.1
1,745,955 - +0.3
1,745,955 - -0.2
1,746,029 + ABIE40_RS09070 0.15 -2.9
1,746,029 + ABIE40_RS09070 0.15 +2.3
1,746,029 + ABIE40_RS09070 0.15 +0.2
1,746,030 - ABIE40_RS09070 0.16 -0.6
1,746,273 + ABIE40_RS09070 0.65 -0.9
1,746,273 + ABIE40_RS09070 0.65 +2.5
1,746,273 + ABIE40_RS09070 0.65 -0.1
1,746,274 - ABIE40_RS09070 0.65 -0.0
1,746,274 - ABIE40_RS09070 0.65 +0.4
1,746,275 + ABIE40_RS09070 0.65 +0.5
1,746,275 + ABIE40_RS09070 0.65 -0.3
1,746,275 + ABIE40_RS09070 0.65 -0.0
1,746,276 - ABIE40_RS09070 0.65 -2.1
1,746,276 - ABIE40_RS09070 0.65 -3.7
1,746,276 - ABIE40_RS09070 0.65 +0.1
1,746,276 - ABIE40_RS09070 0.65 -2.2

Or see this region's nucleotide sequence