Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04850 and ABIE40_RS04855 are separated by 31 nucleotides ABIE40_RS04855 and ABIE40_RS04860 are separated by 173 nucleotides ABIE40_RS04860 and ABIE40_RS04865 are separated by 3 nucleotides
ABIE40_RS04850: ABIE40_RS04850 - DUF930 domain-containing protein, at 951,328 to 951,717
_RS04850
ABIE40_RS04855: ABIE40_RS04855 - Rrf2 family transcriptional regulator, at 951,749 to 952,192
_RS04855
ABIE40_RS04860: ABIE40_RS04860 - alpha/beta hydrolase, at 952,366 to 953,358
_RS04860
ABIE40_RS04865: ABIE40_RS04865 - calcium/proton exchanger, at 953,362 to 954,498
_RS04865
Position (kb) 952
953
954 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 951.520 kb on + strand, within ABIE40_RS04850 at 951.520 kb on + strand, within ABIE40_RS04850 at 951.598 kb on + strand, within ABIE40_RS04850 at 951.599 kb on - strand, within ABIE40_RS04850 at 951.610 kb on + strand, within ABIE40_RS04850 at 951.611 kb on - strand, within ABIE40_RS04850 at 951.611 kb on - strand, within ABIE40_RS04850 at 951.688 kb on - strand at 951.688 kb on - strand at 951.688 kb on - strand at 951.688 kb on - strand at 951.700 kb on + strand at 951.700 kb on + strand at 951.700 kb on + strand at 951.701 kb on - strand at 951.701 kb on - strand at 951.701 kb on - strand at 951.703 kb on + strand at 951.703 kb on + strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.709 kb on + strand at 951.709 kb on + strand at 951.730 kb on - strand at 951.740 kb on + strand at 951.740 kb on + strand at 951.741 kb on - strand at 951.741 kb on - strand at 952.144 kb on + strand, within ABIE40_RS04855 at 952.144 kb on + strand, within ABIE40_RS04855 at 952.144 kb on + strand, within ABIE40_RS04855 at 952.144 kb on + strand, within ABIE40_RS04855 at 952.144 kb on + strand, within ABIE40_RS04855 at 952.145 kb on - strand, within ABIE40_RS04855 at 952.145 kb on - strand, within ABIE40_RS04855 at 952.145 kb on - strand, within ABIE40_RS04855 at 952.301 kb on + strand at 952.323 kb on + strand at 952.324 kb on - strand at 952.324 kb on - strand at 952.324 kb on - strand at 952.324 kb on - strand at 952.324 kb on - strand at 952.591 kb on + strand, within ABIE40_RS04860 at 952.591 kb on + strand, within ABIE40_RS04860 at 952.591 kb on + strand, within ABIE40_RS04860 at 952.592 kb on - strand, within ABIE40_RS04860 at 952.592 kb on - strand, within ABIE40_RS04860 at 952.592 kb on - strand, within ABIE40_RS04860 at 952.592 kb on - strand, within ABIE40_RS04860 at 952.592 kb on - strand, within ABIE40_RS04860 at 952.592 kb on - strand, within ABIE40_RS04860 at 952.816 kb on + strand, within ABIE40_RS04860 at 952.816 kb on + strand, within ABIE40_RS04860 at 952.816 kb on + strand, within ABIE40_RS04860 at 952.817 kb on - strand, within ABIE40_RS04860 at 952.817 kb on - strand, within ABIE40_RS04860 at 952.817 kb on - strand, within ABIE40_RS04860 at 952.817 kb on - strand, within ABIE40_RS04860 at 952.825 kb on + strand, within ABIE40_RS04860 at 952.825 kb on + strand, within ABIE40_RS04860 at 952.826 kb on - strand, within ABIE40_RS04860 at 952.826 kb on - strand, within ABIE40_RS04860 at 952.826 kb on - strand, within ABIE40_RS04860 at 952.826 kb on - strand, within ABIE40_RS04860 at 953.025 kb on - strand, within ABIE40_RS04860 at 953.092 kb on + strand, within ABIE40_RS04860 at 953.092 kb on + strand, within ABIE40_RS04860 at 953.092 kb on + strand, within ABIE40_RS04860 at 953.092 kb on + strand, within ABIE40_RS04860 at 953.092 kb on + strand, within ABIE40_RS04860 at 953.092 kb on + strand, within ABIE40_RS04860 at 953.092 kb on + strand, within ABIE40_RS04860 at 953.093 kb on - strand, within ABIE40_RS04860 at 953.093 kb on - strand, within ABIE40_RS04860 at 953.093 kb on - strand, within ABIE40_RS04860 at 953.093 kb on - strand, within ABIE40_RS04860 at 953.093 kb on - strand, within ABIE40_RS04860 at 953.093 kb on - strand, within ABIE40_RS04860 at 953.093 kb on - strand, within ABIE40_RS04860 at 953.093 kb on - strand, within ABIE40_RS04860 at 953.093 kb on - strand, within ABIE40_RS04860 at 953.093 kb on - strand, within ABIE40_RS04860 at 953.095 kb on + strand, within ABIE40_RS04860 at 953.411 kb on + strand at 953.412 kb on - strand at 953.438 kb on + strand at 953.438 kb on + strand at 953.438 kb on + strand at 953.438 kb on + strand at 953.438 kb on + strand at 953.438 kb on + strand at 953.438 kb on + strand at 953.438 kb on + strand at 953.439 kb on - strand at 953.439 kb on - strand at 953.439 kb on - strand at 953.439 kb on - strand at 953.439 kb on - strand at 953.552 kb on + strand, within ABIE40_RS04865 at 953.552 kb on + strand, within ABIE40_RS04865 at 953.552 kb on + strand, within ABIE40_RS04865 at 953.919 kb on - strand, within ABIE40_RS04865 at 953.985 kb on + strand, within ABIE40_RS04865 at 954.129 kb on + strand, within ABIE40_RS04865 at 954.129 kb on + strand, within ABIE40_RS04865 at 954.129 kb on + strand, within ABIE40_RS04865 at 954.129 kb on + strand, within ABIE40_RS04865 at 954.130 kb on - strand, within ABIE40_RS04865 at 954.173 kb on + strand, within ABIE40_RS04865 at 954.334 kb on + strand, within ABIE40_RS04865 at 954.334 kb on + strand, within ABIE40_RS04865 at 954.348 kb on + strand, within ABIE40_RS04865 at 954.349 kb on - strand, within ABIE40_RS04865 at 954.349 kb on - strand, within ABIE40_RS04865 at 954.349 kb on - strand, within ABIE40_RS04865 at 954.349 kb on - strand, within ABIE40_RS04865 at 954.349 kb on - strand, within ABIE40_RS04865
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 951,520 + ABIE40_RS04850 0.49 -3.3 951,520 + ABIE40_RS04850 0.49 -1.2 951,598 + ABIE40_RS04850 0.69 +0.5 951,599 - ABIE40_RS04850 0.69 -0.2 951,610 + ABIE40_RS04850 0.72 +0.1 951,611 - ABIE40_RS04850 0.73 -1.5 951,611 - ABIE40_RS04850 0.73 -1.4 951,688 - -1.9 951,688 - -3.7 951,688 - -0.9 951,688 - -0.5 951,700 + -1.8 951,700 + -3.1 951,700 + +0.7 951,701 - +3.6 951,701 - -0.1 951,701 - +2.6 951,703 + +0.6 951,703 + +1.8 951,704 - -1.1 951,704 - +0.9 951,704 - +1.5 951,704 - +0.2 951,704 - +0.7 951,704 - -1.9 951,709 + -1.3 951,709 + +1.9 951,730 - -0.2 951,740 + -2.0 951,740 + +0.2 951,741 - -1.4 951,741 - +0.6 952,144 + ABIE40_RS04855 0.89 -2.5 952,144 + ABIE40_RS04855 0.89 -2.5 952,144 + ABIE40_RS04855 0.89 +0.8 952,144 + ABIE40_RS04855 0.89 -0.6 952,144 + ABIE40_RS04855 0.89 -0.2 952,145 - ABIE40_RS04855 0.89 -1.4 952,145 - ABIE40_RS04855 0.89 -0.1 952,145 - ABIE40_RS04855 0.89 -0.7 952,301 + -2.2 952,323 + -1.8 952,324 - -2.5 952,324 - +2.3 952,324 - -2.0 952,324 - -0.8 952,324 - +0.4 952,591 + ABIE40_RS04860 0.23 +2.2 952,591 + ABIE40_RS04860 0.23 +1.0 952,591 + ABIE40_RS04860 0.23 +3.7 952,592 - ABIE40_RS04860 0.23 -4.6 952,592 - ABIE40_RS04860 0.23 +2.6 952,592 - ABIE40_RS04860 0.23 -3.7 952,592 - ABIE40_RS04860 0.23 -0.8 952,592 - ABIE40_RS04860 0.23 +0.4 952,592 - ABIE40_RS04860 0.23 +0.3 952,816 + ABIE40_RS04860 0.45 +1.0 952,816 + ABIE40_RS04860 0.45 -0.1 952,816 + ABIE40_RS04860 0.45 -0.1 952,817 - ABIE40_RS04860 0.45 +2.2 952,817 - ABIE40_RS04860 0.45 -0.8 952,817 - ABIE40_RS04860 0.45 +2.6 952,817 - ABIE40_RS04860 0.45 -0.3 952,825 + ABIE40_RS04860 0.46 +0.2 952,825 + ABIE40_RS04860 0.46 +0.7 952,826 - ABIE40_RS04860 0.46 +1.2 952,826 - ABIE40_RS04860 0.46 -0.4 952,826 - ABIE40_RS04860 0.46 -0.2 952,826 - ABIE40_RS04860 0.46 +0.3 953,025 - ABIE40_RS04860 0.66 +1.5 953,092 + ABIE40_RS04860 0.73 -1.7 953,092 + ABIE40_RS04860 0.73 -0.4 953,092 + ABIE40_RS04860 0.73 +1.3 953,092 + ABIE40_RS04860 0.73 +2.0 953,092 + ABIE40_RS04860 0.73 +0.3 953,092 + ABIE40_RS04860 0.73 +2.2 953,092 + ABIE40_RS04860 0.73 -0.3 953,093 - ABIE40_RS04860 0.73 +3.4 953,093 - ABIE40_RS04860 0.73 -1.2 953,093 - ABIE40_RS04860 0.73 -3.5 953,093 - ABIE40_RS04860 0.73 +0.3 953,093 - ABIE40_RS04860 0.73 -3.5 953,093 - ABIE40_RS04860 0.73 -0.7 953,093 - ABIE40_RS04860 0.73 +1.2 953,093 - ABIE40_RS04860 0.73 +0.3 953,093 - ABIE40_RS04860 0.73 +0.2 953,093 - ABIE40_RS04860 0.73 -0.4 953,095 + ABIE40_RS04860 0.73 +0.1 953,411 + +3.4 953,412 - -1.0 953,438 + +0.3 953,438 + +0.5 953,438 + +0.9 953,438 + +0.2 953,438 + -1.0 953,438 + -1.9 953,438 + -3.6 953,438 + +2.0 953,439 - -3.4 953,439 - -1.0 953,439 - +1.2 953,439 - -0.2 953,439 - +2.2 953,552 + ABIE40_RS04865 0.17 -1.1 953,552 + ABIE40_RS04865 0.17 -2.5 953,552 + ABIE40_RS04865 0.17 -0.2 953,919 - ABIE40_RS04865 0.49 -1.7 953,985 + ABIE40_RS04865 0.55 +2.2 954,129 + ABIE40_RS04865 0.67 +0.4 954,129 + ABIE40_RS04865 0.67 -2.6 954,129 + ABIE40_RS04865 0.67 +1.4 954,129 + ABIE40_RS04865 0.67 +1.6 954,130 - ABIE40_RS04865 0.68 -0.4 954,173 + ABIE40_RS04865 0.71 +1.3 954,334 + ABIE40_RS04865 0.85 +0.3 954,334 + ABIE40_RS04865 0.85 +2.4 954,348 + ABIE40_RS04865 0.87 +1.2 954,349 - ABIE40_RS04865 0.87 -2.6 954,349 - ABIE40_RS04865 0.87 -2.7 954,349 - ABIE40_RS04865 0.87 +0.0 954,349 - ABIE40_RS04865 0.87 +0.4 954,349 - ABIE40_RS04865 0.87 +0.9
Or see this region's nucleotide sequence