Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03470

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS03465 and ABIE40_RS03470 are separated by 2 nucleotidesABIE40_RS03470 and ABIE40_RS03475 are separated by 0 nucleotides ABIE40_RS03465: ABIE40_RS03465 - IMP dehydrogenase, at 688,563 to 690,047 _RS03465 ABIE40_RS03470: ABIE40_RS03470 - hypothetical protein, at 690,050 to 690,601 _RS03470 ABIE40_RS03475: ABIE40_RS03475 - LysR family transcriptional regulator, at 690,602 to 691,516 _RS03475 Position (kb) 690 691Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 690.185 kb on + strand, within ABIE40_RS03470at 690.185 kb on + strand, within ABIE40_RS03470at 690.185 kb on + strand, within ABIE40_RS03470at 690.185 kb on + strand, within ABIE40_RS03470at 690.185 kb on + strand, within ABIE40_RS03470at 690.186 kb on - strand, within ABIE40_RS03470at 690.186 kb on - strand, within ABIE40_RS03470at 690.186 kb on - strand, within ABIE40_RS03470at 690.186 kb on - strand, within ABIE40_RS03470at 690.186 kb on - strand, within ABIE40_RS03470at 690.186 kb on - strand, within ABIE40_RS03470at 690.186 kb on - strand, within ABIE40_RS03470at 690.186 kb on - strand, within ABIE40_RS03470at 690.186 kb on - strand, within ABIE40_RS03470at 690.186 kb on - strand, within ABIE40_RS03470at 690.186 kb on - strand, within ABIE40_RS03470at 690.186 kb on - strand, within ABIE40_RS03470at 690.198 kb on - strand, within ABIE40_RS03470at 690.259 kb on + strand, within ABIE40_RS03470at 690.259 kb on + strand, within ABIE40_RS03470at 690.275 kb on + strand, within ABIE40_RS03470at 690.275 kb on + strand, within ABIE40_RS03470at 690.276 kb on - strand, within ABIE40_RS03470at 690.276 kb on - strand, within ABIE40_RS03470at 690.276 kb on - strand, within ABIE40_RS03470at 690.276 kb on - strand, within ABIE40_RS03470at 690.276 kb on - strand, within ABIE40_RS03470at 690.419 kb on + strand, within ABIE40_RS03470at 690.419 kb on + strand, within ABIE40_RS03470at 690.419 kb on + strand, within ABIE40_RS03470at 690.420 kb on - strand, within ABIE40_RS03470at 690.420 kb on - strand, within ABIE40_RS03470at 690.420 kb on - strand, within ABIE40_RS03470at 690.420 kb on - strand, within ABIE40_RS03470at 690.420 kb on - strand, within ABIE40_RS03470at 690.599 kb on + strandat 690.599 kb on + strandat 690.599 kb on + strandat 690.599 kb on + strandat 690.705 kb on + strand, within ABIE40_RS03475at 690.706 kb on - strand, within ABIE40_RS03475at 690.706 kb on - strand, within ABIE40_RS03475at 690.931 kb on - strand, within ABIE40_RS03475at 690.999 kb on + strand, within ABIE40_RS03475at 691.000 kb on - strand, within ABIE40_RS03475at 691.000 kb on - strand, within ABIE40_RS03475at 691.000 kb on - strand, within ABIE40_RS03475at 691.132 kb on + strand, within ABIE40_RS03475at 691.132 kb on + strand, within ABIE40_RS03475at 691.133 kb on - strand, within ABIE40_RS03475at 691.133 kb on - strand, within ABIE40_RS03475at 691.133 kb on - strand, within ABIE40_RS03475at 691.133 kb on - strand, within ABIE40_RS03475at 691.133 kb on - strand, within ABIE40_RS03475at 691.133 kb on - strand, within ABIE40_RS03475at 691.150 kb on + strand, within ABIE40_RS03475at 691.158 kb on + strand, within ABIE40_RS03475at 691.578 kb on + strandat 691.578 kb on + strandat 691.578 kb on + strandat 691.578 kb on + strandat 691.578 kb on + strandat 691.578 kb on + strandat 691.579 kb on - strandat 691.579 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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690,185 + ABIE40_RS03470 0.24 +0.9
690,185 + ABIE40_RS03470 0.24 -2.6
690,185 + ABIE40_RS03470 0.24 +0.2
690,185 + ABIE40_RS03470 0.24 +0.5
690,185 + ABIE40_RS03470 0.24 -0.3
690,186 - ABIE40_RS03470 0.25 -1.8
690,186 - ABIE40_RS03470 0.25 +2.0
690,186 - ABIE40_RS03470 0.25 +0.4
690,186 - ABIE40_RS03470 0.25 +0.6
690,186 - ABIE40_RS03470 0.25 -0.3
690,186 - ABIE40_RS03470 0.25 -0.4
690,186 - ABIE40_RS03470 0.25 +1.1
690,186 - ABIE40_RS03470 0.25 +0.3
690,186 - ABIE40_RS03470 0.25 -0.0
690,186 - ABIE40_RS03470 0.25 -3.9
690,186 - ABIE40_RS03470 0.25 -1.3
690,186 - ABIE40_RS03470 0.25 -1.1
690,198 - ABIE40_RS03470 0.27 -0.9
690,259 + ABIE40_RS03470 0.38 +0.5
690,259 + ABIE40_RS03470 0.38 -2.4
690,275 + ABIE40_RS03470 0.41 +0.1
690,275 + ABIE40_RS03470 0.41 +1.2
690,276 - ABIE40_RS03470 0.41 -2.3
690,276 - ABIE40_RS03470 0.41 -0.2
690,276 - ABIE40_RS03470 0.41 +0.8
690,276 - ABIE40_RS03470 0.41 -1.5
690,276 - ABIE40_RS03470 0.41 -0.1
690,419 + ABIE40_RS03470 0.67 +2.0
690,419 + ABIE40_RS03470 0.67 -0.4
690,419 + ABIE40_RS03470 0.67 -0.7
690,420 - ABIE40_RS03470 0.67 -0.1
690,420 - ABIE40_RS03470 0.67 -0.1
690,420 - ABIE40_RS03470 0.67 +1.7
690,420 - ABIE40_RS03470 0.67 -2.3
690,420 - ABIE40_RS03470 0.67 +0.5
690,599 + -3.1
690,599 + -0.4
690,599 + -3.9
690,599 + -1.2
690,705 + ABIE40_RS03475 0.11 +0.1
690,706 - ABIE40_RS03475 0.11 +1.3
690,706 - ABIE40_RS03475 0.11 -1.9
690,931 - ABIE40_RS03475 0.36 +0.8
690,999 + ABIE40_RS03475 0.43 +2.3
691,000 - ABIE40_RS03475 0.43 +0.4
691,000 - ABIE40_RS03475 0.43 -0.3
691,000 - ABIE40_RS03475 0.43 +2.6
691,132 + ABIE40_RS03475 0.58 +0.1
691,132 + ABIE40_RS03475 0.58 +1.7
691,133 - ABIE40_RS03475 0.58 -0.9
691,133 - ABIE40_RS03475 0.58 -3.1
691,133 - ABIE40_RS03475 0.58 -0.4
691,133 - ABIE40_RS03475 0.58 +0.5
691,133 - ABIE40_RS03475 0.58 +0.7
691,133 - ABIE40_RS03475 0.58 -1.1
691,150 + ABIE40_RS03475 0.60 +0.1
691,158 + ABIE40_RS03475 0.61 -1.0
691,578 + -2.3
691,578 + +1.8
691,578 + +1.9
691,578 + +1.2
691,578 + +2.2
691,578 + +2.7
691,579 - +2.2
691,579 - +0.2

Or see this region's nucleotide sequence