Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01615 and ABIE40_RS01620 are separated by 199 nucleotides ABIE40_RS01620 and ABIE40_RS01625 are separated by 3 nucleotides
ABIE40_RS01615: ABIE40_RS01615 - transcriptional regulator GcvA, at 319,742 to 320,629
_RS01615
ABIE40_RS01620: ABIE40_RS01620 - DMT family transporter, at 320,829 to 321,749
_RS01620
ABIE40_RS01625: ABIE40_RS01625 - radical SAM family heme chaperone HemW, at 321,753 to 322,955
_RS01625
Position (kb) 320
321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 319.947 kb on + strand, within ABIE40_RS01615 at 319.948 kb on - strand, within ABIE40_RS01615 at 319.948 kb on - strand, within ABIE40_RS01615 at 320.043 kb on + strand, within ABIE40_RS01615 at 320.043 kb on + strand, within ABIE40_RS01615 at 320.044 kb on - strand, within ABIE40_RS01615 at 320.044 kb on - strand, within ABIE40_RS01615 at 320.044 kb on - strand, within ABIE40_RS01615 at 320.310 kb on + strand, within ABIE40_RS01615 at 320.310 kb on + strand, within ABIE40_RS01615 at 320.310 kb on + strand, within ABIE40_RS01615 at 320.310 kb on + strand, within ABIE40_RS01615 at 320.310 kb on + strand, within ABIE40_RS01615 at 320.310 kb on + strand, within ABIE40_RS01615 at 320.310 kb on + strand, within ABIE40_RS01615 at 320.310 kb on + strand, within ABIE40_RS01615 at 320.310 kb on + strand, within ABIE40_RS01615 at 320.310 kb on + strand, within ABIE40_RS01615 at 320.311 kb on - strand, within ABIE40_RS01615 at 320.311 kb on - strand, within ABIE40_RS01615 at 320.311 kb on - strand, within ABIE40_RS01615 at 320.311 kb on - strand, within ABIE40_RS01615 at 320.424 kb on + strand, within ABIE40_RS01615 at 320.424 kb on + strand, within ABIE40_RS01615 at 320.644 kb on - strand at 320.684 kb on + strand at 320.712 kb on - strand at 320.804 kb on + strand at 320.805 kb on - strand at 320.805 kb on - strand at 320.805 kb on - strand at 321.113 kb on + strand, within ABIE40_RS01620 at 321.114 kb on - strand, within ABIE40_RS01620 at 321.252 kb on + strand, within ABIE40_RS01620 at 321.252 kb on + strand, within ABIE40_RS01620 at 321.252 kb on + strand, within ABIE40_RS01620 at 321.252 kb on + strand, within ABIE40_RS01620 at 321.252 kb on + strand, within ABIE40_RS01620 at 321.252 kb on + strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.254 kb on + strand, within ABIE40_RS01620 at 321.254 kb on + strand, within ABIE40_RS01620 at 321.254 kb on + strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.330 kb on + strand, within ABIE40_RS01620 at 321.334 kb on - strand, within ABIE40_RS01620 at 321.378 kb on - strand, within ABIE40_RS01620 at 321.537 kb on + strand, within ABIE40_RS01620 at 321.537 kb on + strand, within ABIE40_RS01620 at 321.537 kb on + strand, within ABIE40_RS01620 at 321.538 kb on - strand, within ABIE40_RS01620 at 321.538 kb on - strand, within ABIE40_RS01620 at 321.538 kb on - strand, within ABIE40_RS01620 at 321.538 kb on - strand, within ABIE40_RS01620 at 321.538 kb on - strand, within ABIE40_RS01620 at 321.593 kb on + strand, within ABIE40_RS01620 at 321.594 kb on - strand, within ABIE40_RS01620 at 321.594 kb on - strand, within ABIE40_RS01620 at 321.594 kb on - strand, within ABIE40_RS01620 at 321.594 kb on - strand, within ABIE40_RS01620
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 319,947 + ABIE40_RS01615 0.23 +3.4 319,948 - ABIE40_RS01615 0.23 -2.9 319,948 - ABIE40_RS01615 0.23 -0.1 320,043 + ABIE40_RS01615 0.34 -1.0 320,043 + ABIE40_RS01615 0.34 -0.4 320,044 - ABIE40_RS01615 0.34 +0.4 320,044 - ABIE40_RS01615 0.34 +1.1 320,044 - ABIE40_RS01615 0.34 +0.6 320,310 + ABIE40_RS01615 0.64 -3.5 320,310 + ABIE40_RS01615 0.64 +0.5 320,310 + ABIE40_RS01615 0.64 +1.0 320,310 + ABIE40_RS01615 0.64 -1.8 320,310 + ABIE40_RS01615 0.64 -3.5 320,310 + ABIE40_RS01615 0.64 -1.1 320,310 + ABIE40_RS01615 0.64 +1.0 320,310 + ABIE40_RS01615 0.64 -2.3 320,310 + ABIE40_RS01615 0.64 -2.4 320,310 + ABIE40_RS01615 0.64 -0.5 320,311 - ABIE40_RS01615 0.64 -3.0 320,311 - ABIE40_RS01615 0.64 -0.0 320,311 - ABIE40_RS01615 0.64 +1.2 320,311 - ABIE40_RS01615 0.64 +2.0 320,424 + ABIE40_RS01615 0.77 +0.4 320,424 + ABIE40_RS01615 0.77 +3.9 320,644 - +2.1 320,684 + +0.6 320,712 - +0.9 320,804 + +0.7 320,805 - -2.6 320,805 - +0.7 320,805 - -3.1 321,113 + ABIE40_RS01620 0.31 +0.8 321,114 - ABIE40_RS01620 0.31 +2.2 321,252 + ABIE40_RS01620 0.46 +1.5 321,252 + ABIE40_RS01620 0.46 -3.7 321,252 + ABIE40_RS01620 0.46 -1.7 321,252 + ABIE40_RS01620 0.46 +2.5 321,252 + ABIE40_RS01620 0.46 +0.5 321,252 + ABIE40_RS01620 0.46 +0.4 321,253 - ABIE40_RS01620 0.46 +1.4 321,253 - ABIE40_RS01620 0.46 +0.1 321,253 - ABIE40_RS01620 0.46 +1.9 321,253 - ABIE40_RS01620 0.46 -1.8 321,253 - ABIE40_RS01620 0.46 -2.0 321,253 - ABIE40_RS01620 0.46 -2.5 321,253 - ABIE40_RS01620 0.46 +2.4 321,253 - ABIE40_RS01620 0.46 +0.5 321,254 + ABIE40_RS01620 0.46 +0.4 321,254 + ABIE40_RS01620 0.46 -0.1 321,254 + ABIE40_RS01620 0.46 +0.2 321,255 - ABIE40_RS01620 0.46 +2.7 321,255 - ABIE40_RS01620 0.46 +0.2 321,255 - ABIE40_RS01620 0.46 +0.3 321,255 - ABIE40_RS01620 0.46 +0.2 321,255 - ABIE40_RS01620 0.46 -1.9 321,255 - ABIE40_RS01620 0.46 -2.9 321,255 - ABIE40_RS01620 0.46 +0.3 321,330 + ABIE40_RS01620 0.54 -3.4 321,334 - ABIE40_RS01620 0.55 -1.2 321,378 - ABIE40_RS01620 0.60 -0.1 321,537 + ABIE40_RS01620 0.77 +0.4 321,537 + ABIE40_RS01620 0.77 -0.8 321,537 + ABIE40_RS01620 0.77 +0.1 321,538 - ABIE40_RS01620 0.77 +0.2 321,538 - ABIE40_RS01620 0.77 -1.2 321,538 - ABIE40_RS01620 0.77 -1.1 321,538 - ABIE40_RS01620 0.77 +1.4 321,538 - ABIE40_RS01620 0.77 -0.5 321,593 + ABIE40_RS01620 0.83 -0.1 321,594 - ABIE40_RS01620 0.83 -3.3 321,594 - ABIE40_RS01620 0.83 +0.3 321,594 - ABIE40_RS01620 0.83 -1.4 321,594 - ABIE40_RS01620 0.83 -0.8
Or see this region's nucleotide sequence