Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01505 and ABIE40_RS01510 are separated by 118 nucleotides ABIE40_RS01510 and ABIE40_RS01515 are separated by 42 nucleotides ABIE40_RS01515 and ABIE40_RS01520 are separated by 104 nucleotides
ABIE40_RS01505: ABIE40_RS01505 - LysR family transcriptional regulator, at 296,216 to 297,115
_RS01505
ABIE40_RS01510: ABIE40_RS01510 - NmrA family NAD(P)-binding protein, at 297,234 to 298,094
_RS01510
ABIE40_RS01515: ABIE40_RS01515 - SDR family oxidoreductase, at 298,137 to 298,886
_RS01515
ABIE40_RS01520: ABIE40_RS01520 - SDR family oxidoreductase, at 298,991 to 299,755
_RS01520
Position (kb) 297
298
299 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 296.255 kb on + strand at 296.256 kb on - strand at 296.256 kb on - strand at 296.286 kb on + strand at 296.286 kb on + strand at 296.287 kb on - strand at 296.287 kb on - strand at 296.287 kb on - strand at 296.287 kb on - strand at 296.287 kb on - strand at 296.358 kb on + strand, within ABIE40_RS01505 at 296.358 kb on + strand, within ABIE40_RS01505 at 296.359 kb on - strand, within ABIE40_RS01505 at 296.529 kb on + strand, within ABIE40_RS01505 at 296.592 kb on + strand, within ABIE40_RS01505 at 296.592 kb on + strand, within ABIE40_RS01505 at 296.592 kb on + strand, within ABIE40_RS01505 at 296.592 kb on + strand, within ABIE40_RS01505 at 296.592 kb on + strand, within ABIE40_RS01505 at 296.593 kb on - strand, within ABIE40_RS01505 at 296.593 kb on - strand, within ABIE40_RS01505 at 296.593 kb on - strand, within ABIE40_RS01505 at 296.593 kb on - strand, within ABIE40_RS01505 at 296.611 kb on + strand, within ABIE40_RS01505 at 296.611 kb on + strand, within ABIE40_RS01505 at 296.805 kb on + strand, within ABIE40_RS01505 at 296.805 kb on + strand, within ABIE40_RS01505 at 296.805 kb on + strand, within ABIE40_RS01505 at 296.806 kb on - strand, within ABIE40_RS01505 at 296.806 kb on - strand, within ABIE40_RS01505 at 296.910 kb on + strand, within ABIE40_RS01505 at 296.910 kb on + strand, within ABIE40_RS01505 at 296.910 kb on + strand, within ABIE40_RS01505 at 296.911 kb on - strand, within ABIE40_RS01505 at 297.244 kb on + strand at 297.370 kb on + strand, within ABIE40_RS01510 at 297.738 kb on - strand, within ABIE40_RS01510 at 297.738 kb on - strand, within ABIE40_RS01510 at 297.841 kb on - strand, within ABIE40_RS01510 at 298.088 kb on + strand at 298.088 kb on + strand at 298.089 kb on - strand at 298.089 kb on - strand at 298.089 kb on - strand at 298.184 kb on + strand at 298.184 kb on + strand at 298.185 kb on - strand at 298.185 kb on - strand at 298.185 kb on - strand at 298.186 kb on + strand at 298.186 kb on + strand at 298.186 kb on + strand at 298.187 kb on - strand at 298.187 kb on - strand at 298.187 kb on - strand at 298.187 kb on - strand at 298.187 kb on - strand at 298.324 kb on + strand, within ABIE40_RS01515 at 298.324 kb on + strand, within ABIE40_RS01515 at 298.324 kb on + strand, within ABIE40_RS01515 at 298.325 kb on - strand, within ABIE40_RS01515 at 298.325 kb on - strand, within ABIE40_RS01515 at 298.438 kb on + strand, within ABIE40_RS01515 at 298.475 kb on + strand, within ABIE40_RS01515 at 298.475 kb on + strand, within ABIE40_RS01515 at 298.475 kb on + strand, within ABIE40_RS01515 at 298.475 kb on + strand, within ABIE40_RS01515 at 298.476 kb on - strand, within ABIE40_RS01515 at 298.476 kb on - strand, within ABIE40_RS01515 at 298.923 kb on + strand at 299.070 kb on + strand, within ABIE40_RS01520 at 299.070 kb on + strand, within ABIE40_RS01520 at 299.071 kb on - strand, within ABIE40_RS01520 at 299.071 kb on - strand, within ABIE40_RS01520
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 296,255 + +0.5 296,256 - -1.1 296,256 - +7.4 296,286 + -3.3 296,286 + +2.0 296,287 - -0.4 296,287 - +1.3 296,287 - +2.5 296,287 - +0.8 296,287 - +0.8 296,358 + ABIE40_RS01505 0.16 +0.0 296,358 + ABIE40_RS01505 0.16 +1.2 296,359 - ABIE40_RS01505 0.16 +0.8 296,529 + ABIE40_RS01505 0.35 -2.4 296,592 + ABIE40_RS01505 0.42 -0.2 296,592 + ABIE40_RS01505 0.42 +0.2 296,592 + ABIE40_RS01505 0.42 +0.2 296,592 + ABIE40_RS01505 0.42 +0.5 296,592 + ABIE40_RS01505 0.42 -0.5 296,593 - ABIE40_RS01505 0.42 +0.9 296,593 - ABIE40_RS01505 0.42 -1.5 296,593 - ABIE40_RS01505 0.42 +0.6 296,593 - ABIE40_RS01505 0.42 +0.0 296,611 + ABIE40_RS01505 0.44 -2.5 296,611 + ABIE40_RS01505 0.44 +1.5 296,805 + ABIE40_RS01505 0.65 +0.2 296,805 + ABIE40_RS01505 0.65 +1.2 296,805 + ABIE40_RS01505 0.65 -1.1 296,806 - ABIE40_RS01505 0.66 -0.5 296,806 - ABIE40_RS01505 0.66 -0.3 296,910 + ABIE40_RS01505 0.77 -4.1 296,910 + ABIE40_RS01505 0.77 -0.0 296,910 + ABIE40_RS01505 0.77 +0.7 296,911 - ABIE40_RS01505 0.77 -0.0 297,244 + -1.6 297,370 + ABIE40_RS01510 0.16 -0.5 297,738 - ABIE40_RS01510 0.59 -0.4 297,738 - ABIE40_RS01510 0.59 -1.8 297,841 - ABIE40_RS01510 0.70 -1.7 298,088 + -1.4 298,088 + -1.0 298,089 - -0.3 298,089 - +0.4 298,089 - -2.7 298,184 + -1.0 298,184 + -1.4 298,185 - -0.3 298,185 - +0.7 298,185 - -2.3 298,186 + -1.2 298,186 + -0.2 298,186 + -2.5 298,187 - -0.8 298,187 - +1.2 298,187 - +2.6 298,187 - -0.9 298,187 - +2.2 298,324 + ABIE40_RS01515 0.25 +0.2 298,324 + ABIE40_RS01515 0.25 +2.1 298,324 + ABIE40_RS01515 0.25 -1.3 298,325 - ABIE40_RS01515 0.25 +1.4 298,325 - ABIE40_RS01515 0.25 +1.0 298,438 + ABIE40_RS01515 0.40 +0.9 298,475 + ABIE40_RS01515 0.45 +0.2 298,475 + ABIE40_RS01515 0.45 +1.7 298,475 + ABIE40_RS01515 0.45 -1.7 298,475 + ABIE40_RS01515 0.45 -2.7 298,476 - ABIE40_RS01515 0.45 +0.5 298,476 - ABIE40_RS01515 0.45 -0.8 298,923 + -0.7 299,070 + ABIE40_RS01520 0.10 -3.5 299,070 + ABIE40_RS01520 0.10 -1.2 299,071 - ABIE40_RS01520 0.10 -1.4 299,071 - ABIE40_RS01520 0.10 -3.6
Or see this region's nucleotide sequence