Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00075 and ABIE40_RS00080 are separated by 2 nucleotides ABIE40_RS00080 and ABIE40_RS00085 are separated by 131 nucleotides
ABIE40_RS00075: ABIE40_RS00075 - dihydrodipicolinate synthase family protein, at 16,340 to 17,506
_RS00075
ABIE40_RS00080: ABIE40_RS00080 - Gfo/Idh/MocA family oxidoreductase, at 17,509 to 18,657
_RS00080
ABIE40_RS00085: ABIE40_RS00085 - TetR family transcriptional regulator, at 18,789 to 19,466
_RS00085
Position (kb) 17
18
19 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 16.539 kb on + strand, within ABIE40_RS00075 at 16.539 kb on + strand, within ABIE40_RS00075 at 16.539 kb on + strand, within ABIE40_RS00075 at 16.539 kb on + strand, within ABIE40_RS00075 at 16.564 kb on + strand, within ABIE40_RS00075 at 16.564 kb on + strand, within ABIE40_RS00075 at 16.564 kb on + strand, within ABIE40_RS00075 at 16.729 kb on - strand, within ABIE40_RS00075 at 16.729 kb on - strand, within ABIE40_RS00075 at 16.748 kb on - strand, within ABIE40_RS00075 at 16.748 kb on - strand, within ABIE40_RS00075 at 16.749 kb on + strand, within ABIE40_RS00075 at 16.749 kb on + strand, within ABIE40_RS00075 at 16.749 kb on + strand, within ABIE40_RS00075 at 16.749 kb on + strand, within ABIE40_RS00075 at 16.749 kb on + strand, within ABIE40_RS00075 at 16.750 kb on - strand, within ABIE40_RS00075 at 16.750 kb on - strand, within ABIE40_RS00075 at 16.750 kb on - strand, within ABIE40_RS00075 at 16.750 kb on - strand, within ABIE40_RS00075 at 16.750 kb on - strand, within ABIE40_RS00075 at 16.750 kb on - strand, within ABIE40_RS00075 at 16.750 kb on - strand, within ABIE40_RS00075 at 16.750 kb on - strand, within ABIE40_RS00075 at 16.750 kb on - strand, within ABIE40_RS00075 at 16.750 kb on - strand, within ABIE40_RS00075 at 16.818 kb on + strand, within ABIE40_RS00075 at 16.859 kb on + strand, within ABIE40_RS00075 at 16.859 kb on + strand, within ABIE40_RS00075 at 16.859 kb on + strand, within ABIE40_RS00075 at 16.860 kb on - strand, within ABIE40_RS00075 at 16.902 kb on + strand, within ABIE40_RS00075 at 16.902 kb on + strand, within ABIE40_RS00075 at 16.903 kb on - strand, within ABIE40_RS00075 at 16.903 kb on - strand, within ABIE40_RS00075 at 16.961 kb on + strand, within ABIE40_RS00075 at 16.962 kb on - strand, within ABIE40_RS00075 at 16.962 kb on - strand, within ABIE40_RS00075 at 16.984 kb on - strand, within ABIE40_RS00075 at 16.993 kb on + strand, within ABIE40_RS00075 at 16.994 kb on - strand, within ABIE40_RS00075 at 16.995 kb on + strand, within ABIE40_RS00075 at 16.995 kb on + strand, within ABIE40_RS00075 at 16.995 kb on + strand, within ABIE40_RS00075 at 16.995 kb on + strand, within ABIE40_RS00075 at 16.995 kb on + strand, within ABIE40_RS00075 at 16.996 kb on - strand, within ABIE40_RS00075 at 16.996 kb on - strand, within ABIE40_RS00075 at 16.996 kb on - strand, within ABIE40_RS00075 at 17.042 kb on - strand, within ABIE40_RS00075 at 17.042 kb on - strand, within ABIE40_RS00075 at 17.091 kb on + strand, within ABIE40_RS00075 at 17.092 kb on - strand, within ABIE40_RS00075 at 17.092 kb on - strand, within ABIE40_RS00075 at 17.092 kb on - strand, within ABIE40_RS00075 at 17.092 kb on - strand, within ABIE40_RS00075 at 17.394 kb on + strand at 17.394 kb on + strand at 17.394 kb on + strand at 17.394 kb on + strand at 17.395 kb on - strand at 17.460 kb on + strand at 17.714 kb on + strand, within ABIE40_RS00080 at 17.714 kb on + strand, within ABIE40_RS00080 at 17.714 kb on + strand, within ABIE40_RS00080 at 17.715 kb on - strand, within ABIE40_RS00080 at 17.921 kb on + strand, within ABIE40_RS00080 at 17.946 kb on + strand, within ABIE40_RS00080 at 17.946 kb on + strand, within ABIE40_RS00080 at 17.946 kb on + strand, within ABIE40_RS00080 at 17.947 kb on - strand, within ABIE40_RS00080 at 17.947 kb on - strand, within ABIE40_RS00080 at 17.947 kb on - strand, within ABIE40_RS00080 at 17.947 kb on - strand, within ABIE40_RS00080 at 17.947 kb on - strand, within ABIE40_RS00080 at 17.948 kb on + strand, within ABIE40_RS00080 at 17.948 kb on + strand, within ABIE40_RS00080 at 17.948 kb on + strand, within ABIE40_RS00080 at 17.949 kb on - strand, within ABIE40_RS00080 at 17.949 kb on - strand, within ABIE40_RS00080 at 17.988 kb on + strand, within ABIE40_RS00080 at 18.041 kb on + strand, within ABIE40_RS00080 at 18.041 kb on + strand, within ABIE40_RS00080 at 18.041 kb on + strand, within ABIE40_RS00080 at 18.042 kb on - strand, within ABIE40_RS00080 at 18.060 kb on + strand, within ABIE40_RS00080 at 18.060 kb on + strand, within ABIE40_RS00080 at 18.061 kb on - strand, within ABIE40_RS00080 at 18.061 kb on - strand, within ABIE40_RS00080 at 18.095 kb on + strand, within ABIE40_RS00080 at 18.095 kb on + strand, within ABIE40_RS00080 at 18.096 kb on - strand, within ABIE40_RS00080 at 18.096 kb on - strand, within ABIE40_RS00080 at 18.096 kb on - strand, within ABIE40_RS00080 at 18.096 kb on - strand, within ABIE40_RS00080 at 18.096 kb on - strand, within ABIE40_RS00080 at 18.302 kb on - strand, within ABIE40_RS00080 at 18.302 kb on - strand, within ABIE40_RS00080 at 18.335 kb on + strand, within ABIE40_RS00080 at 18.335 kb on + strand, within ABIE40_RS00080 at 18.335 kb on + strand, within ABIE40_RS00080 at 18.335 kb on + strand, within ABIE40_RS00080 at 18.336 kb on - strand, within ABIE40_RS00080 at 18.336 kb on - strand, within ABIE40_RS00080 at 18.336 kb on - strand, within ABIE40_RS00080 at 18.468 kb on + strand, within ABIE40_RS00080 at 18.468 kb on + strand, within ABIE40_RS00080 at 18.468 kb on + strand, within ABIE40_RS00080 at 18.468 kb on + strand, within ABIE40_RS00080 at 18.468 kb on + strand, within ABIE40_RS00080 at 18.468 kb on + strand, within ABIE40_RS00080 at 18.469 kb on - strand, within ABIE40_RS00080 at 18.469 kb on - strand, within ABIE40_RS00080 at 18.469 kb on - strand, within ABIE40_RS00080 at 18.469 kb on - strand, within ABIE40_RS00080 at 18.608 kb on + strand at 18.608 kb on + strand at 18.608 kb on + strand at 18.608 kb on + strand at 18.608 kb on + strand at 18.766 kb on + strand at 18.767 kb on - strand at 18.767 kb on - strand at 18.824 kb on + strand at 18.825 kb on - strand at 18.825 kb on - strand at 18.825 kb on - strand at 18.892 kb on + strand, within ABIE40_RS00085 at 18.892 kb on + strand, within ABIE40_RS00085 at 18.907 kb on + strand, within ABIE40_RS00085 at 18.913 kb on + strand, within ABIE40_RS00085 at 18.913 kb on + strand, within ABIE40_RS00085 at 18.914 kb on - strand, within ABIE40_RS00085 at 18.937 kb on + strand, within ABIE40_RS00085 at 18.938 kb on - strand, within ABIE40_RS00085 at 19.124 kb on - strand, within ABIE40_RS00085 at 19.152 kb on - strand, within ABIE40_RS00085 at 19.181 kb on + strand, within ABIE40_RS00085 at 19.181 kb on + strand, within ABIE40_RS00085 at 19.182 kb on - strand, within ABIE40_RS00085 at 19.182 kb on - strand, within ABIE40_RS00085 at 19.182 kb on - strand, within ABIE40_RS00085 at 19.182 kb on - strand, within ABIE40_RS00085 at 19.216 kb on + strand, within ABIE40_RS00085 at 19.216 kb on + strand, within ABIE40_RS00085 at 19.216 kb on + strand, within ABIE40_RS00085 at 19.216 kb on + strand, within ABIE40_RS00085 at 19.216 kb on + strand, within ABIE40_RS00085 at 19.216 kb on + strand, within ABIE40_RS00085 at 19.217 kb on - strand, within ABIE40_RS00085 at 19.217 kb on - strand, within ABIE40_RS00085 at 19.217 kb on - strand, within ABIE40_RS00085 at 19.217 kb on - strand, within ABIE40_RS00085 at 19.241 kb on - strand, within ABIE40_RS00085 at 19.241 kb on - strand, within ABIE40_RS00085 at 19.265 kb on - strand, within ABIE40_RS00085 at 19.270 kb on + strand, within ABIE40_RS00085 at 19.270 kb on + strand, within ABIE40_RS00085 at 19.270 kb on + strand, within ABIE40_RS00085 at 19.271 kb on - strand, within ABIE40_RS00085 at 19.365 kb on + strand, within ABIE40_RS00085 at 19.365 kb on + strand, within ABIE40_RS00085 at 19.366 kb on - strand, within ABIE40_RS00085 at 19.366 kb on - strand, within ABIE40_RS00085 at 19.366 kb on - strand, within ABIE40_RS00085 at 19.473 kb on - strand at 19.487 kb on + strand at 19.487 kb on + strand at 19.501 kb on + strand at 19.501 kb on + strand at 19.501 kb on + strand at 19.501 kb on + strand at 19.501 kb on + strand at 19.502 kb on - strand at 19.502 kb on - strand at 19.522 kb on + strand at 19.522 kb on + strand at 19.522 kb on + strand at 19.522 kb on + strand at 19.522 kb on + strand at 19.522 kb on + strand at 19.523 kb on - strand at 19.523 kb on - strand at 19.523 kb on - strand at 19.523 kb on - strand at 19.523 kb on - strand at 19.523 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 16,539 + ABIE40_RS00075 0.17 -1.1 16,539 + ABIE40_RS00075 0.17 +1.5 16,539 + ABIE40_RS00075 0.17 +1.9 16,539 + ABIE40_RS00075 0.17 +0.2 16,564 + ABIE40_RS00075 0.19 +1.4 16,564 + ABIE40_RS00075 0.19 -3.2 16,564 + ABIE40_RS00075 0.19 -2.3 16,729 - ABIE40_RS00075 0.33 +1.2 16,729 - ABIE40_RS00075 0.33 +2.8 16,748 - ABIE40_RS00075 0.35 +2.7 16,748 - ABIE40_RS00075 0.35 +1.5 16,749 + ABIE40_RS00075 0.35 +1.5 16,749 + ABIE40_RS00075 0.35 +1.1 16,749 + ABIE40_RS00075 0.35 +1.3 16,749 + ABIE40_RS00075 0.35 +0.2 16,749 + ABIE40_RS00075 0.35 -2.6 16,750 - ABIE40_RS00075 0.35 -0.6 16,750 - ABIE40_RS00075 0.35 +1.8 16,750 - ABIE40_RS00075 0.35 +0.5 16,750 - ABIE40_RS00075 0.35 -0.3 16,750 - ABIE40_RS00075 0.35 +1.7 16,750 - ABIE40_RS00075 0.35 -2.5 16,750 - ABIE40_RS00075 0.35 +0.9 16,750 - ABIE40_RS00075 0.35 -0.5 16,750 - ABIE40_RS00075 0.35 -0.5 16,750 - ABIE40_RS00075 0.35 +3.4 16,818 + ABIE40_RS00075 0.41 +2.0 16,859 + ABIE40_RS00075 0.44 +0.9 16,859 + ABIE40_RS00075 0.44 -0.3 16,859 + ABIE40_RS00075 0.44 +0.5 16,860 - ABIE40_RS00075 0.45 -2.6 16,902 + ABIE40_RS00075 0.48 +0.8 16,902 + ABIE40_RS00075 0.48 -2.7 16,903 - ABIE40_RS00075 0.48 +2.1 16,903 - ABIE40_RS00075 0.48 -2.0 16,961 + ABIE40_RS00075 0.53 -0.0 16,962 - ABIE40_RS00075 0.53 +0.8 16,962 - ABIE40_RS00075 0.53 +1.7 16,984 - ABIE40_RS00075 0.55 +2.4 16,993 + ABIE40_RS00075 0.56 -0.1 16,994 - ABIE40_RS00075 0.56 -0.8 16,995 + ABIE40_RS00075 0.56 +0.9 16,995 + ABIE40_RS00075 0.56 -0.7 16,995 + ABIE40_RS00075 0.56 +1.5 16,995 + ABIE40_RS00075 0.56 -0.3 16,995 + ABIE40_RS00075 0.56 -0.7 16,996 - ABIE40_RS00075 0.56 +0.5 16,996 - ABIE40_RS00075 0.56 -2.0 16,996 - ABIE40_RS00075 0.56 -2.2 17,042 - ABIE40_RS00075 0.60 -0.3 17,042 - ABIE40_RS00075 0.60 +0.5 17,091 + ABIE40_RS00075 0.64 -0.7 17,092 - ABIE40_RS00075 0.64 +0.6 17,092 - ABIE40_RS00075 0.64 -0.3 17,092 - ABIE40_RS00075 0.64 -0.5 17,092 - ABIE40_RS00075 0.64 -3.9 17,394 + -3.9 17,394 + -3.4 17,394 + -0.3 17,394 + -1.1 17,395 - +0.6 17,460 + +0.2 17,714 + ABIE40_RS00080 0.18 -2.2 17,714 + ABIE40_RS00080 0.18 +0.2 17,714 + ABIE40_RS00080 0.18 +3.3 17,715 - ABIE40_RS00080 0.18 +0.1 17,921 + ABIE40_RS00080 0.36 +0.5 17,946 + ABIE40_RS00080 0.38 -2.3 17,946 + ABIE40_RS00080 0.38 -1.1 17,946 + ABIE40_RS00080 0.38 +1.3 17,947 - ABIE40_RS00080 0.38 -1.0 17,947 - ABIE40_RS00080 0.38 -1.8 17,947 - ABIE40_RS00080 0.38 +2.8 17,947 - ABIE40_RS00080 0.38 -0.2 17,947 - ABIE40_RS00080 0.38 +2.0 17,948 + ABIE40_RS00080 0.38 -2.2 17,948 + ABIE40_RS00080 0.38 -0.3 17,948 + ABIE40_RS00080 0.38 -2.5 17,949 - ABIE40_RS00080 0.38 +0.7 17,949 - ABIE40_RS00080 0.38 -1.8 17,988 + ABIE40_RS00080 0.42 -3.0 18,041 + ABIE40_RS00080 0.46 -1.3 18,041 + ABIE40_RS00080 0.46 +0.2 18,041 + ABIE40_RS00080 0.46 +1.2 18,042 - ABIE40_RS00080 0.46 +0.5 18,060 + ABIE40_RS00080 0.48 +1.9 18,060 + ABIE40_RS00080 0.48 +3.0 18,061 - ABIE40_RS00080 0.48 -3.9 18,061 - ABIE40_RS00080 0.48 +0.4 18,095 + ABIE40_RS00080 0.51 -2.7 18,095 + ABIE40_RS00080 0.51 -1.5 18,096 - ABIE40_RS00080 0.51 -0.3 18,096 - ABIE40_RS00080 0.51 -0.8 18,096 - ABIE40_RS00080 0.51 +1.6 18,096 - ABIE40_RS00080 0.51 +2.2 18,096 - ABIE40_RS00080 0.51 +1.7 18,302 - ABIE40_RS00080 0.69 -0.1 18,302 - ABIE40_RS00080 0.69 +1.5 18,335 + ABIE40_RS00080 0.72 +1.1 18,335 + ABIE40_RS00080 0.72 -0.7 18,335 + ABIE40_RS00080 0.72 +1.5 18,335 + ABIE40_RS00080 0.72 -0.3 18,336 - ABIE40_RS00080 0.72 -1.7 18,336 - ABIE40_RS00080 0.72 -1.4 18,336 - ABIE40_RS00080 0.72 -1.2 18,468 + ABIE40_RS00080 0.83 -1.1 18,468 + ABIE40_RS00080 0.83 -2.7 18,468 + ABIE40_RS00080 0.83 -2.3 18,468 + ABIE40_RS00080 0.83 +1.4 18,468 + ABIE40_RS00080 0.83 +1.9 18,468 + ABIE40_RS00080 0.83 -1.4 18,469 - ABIE40_RS00080 0.84 -0.1 18,469 - ABIE40_RS00080 0.84 +1.3 18,469 - ABIE40_RS00080 0.84 -0.2 18,469 - ABIE40_RS00080 0.84 +1.3 18,608 + +2.2 18,608 + -0.2 18,608 + +1.1 18,608 + -3.9 18,608 + +1.0 18,766 + -1.4 18,767 - +2.5 18,767 - +2.9 18,824 + +1.0 18,825 - +0.5 18,825 - +1.3 18,825 - -1.3 18,892 + ABIE40_RS00085 0.15 +0.7 18,892 + ABIE40_RS00085 0.15 -0.3 18,907 + ABIE40_RS00085 0.17 +0.4 18,913 + ABIE40_RS00085 0.18 +2.9 18,913 + ABIE40_RS00085 0.18 +1.9 18,914 - ABIE40_RS00085 0.18 +0.6 18,937 + ABIE40_RS00085 0.22 +2.4 18,938 - ABIE40_RS00085 0.22 -2.9 19,124 - ABIE40_RS00085 0.49 +1.7 19,152 - ABIE40_RS00085 0.54 +1.7 19,181 + ABIE40_RS00085 0.58 +0.7 19,181 + ABIE40_RS00085 0.58 +0.8 19,182 - ABIE40_RS00085 0.58 +1.0 19,182 - ABIE40_RS00085 0.58 -3.5 19,182 - ABIE40_RS00085 0.58 -3.1 19,182 - ABIE40_RS00085 0.58 -1.3 19,216 + ABIE40_RS00085 0.63 +0.4 19,216 + ABIE40_RS00085 0.63 +1.5 19,216 + ABIE40_RS00085 0.63 -2.1 19,216 + ABIE40_RS00085 0.63 -0.2 19,216 + ABIE40_RS00085 0.63 -1.0 19,216 + ABIE40_RS00085 0.63 +0.5 19,217 - ABIE40_RS00085 0.63 -3.4 19,217 - ABIE40_RS00085 0.63 -1.3 19,217 - ABIE40_RS00085 0.63 +0.6 19,217 - ABIE40_RS00085 0.63 +1.4 19,241 - ABIE40_RS00085 0.67 +0.5 19,241 - ABIE40_RS00085 0.67 +1.2 19,265 - ABIE40_RS00085 0.70 +1.3 19,270 + ABIE40_RS00085 0.71 +3.5 19,270 + ABIE40_RS00085 0.71 +1.8 19,270 + ABIE40_RS00085 0.71 -0.1 19,271 - ABIE40_RS00085 0.71 +1.2 19,365 + ABIE40_RS00085 0.85 -1.8 19,365 + ABIE40_RS00085 0.85 +0.0 19,366 - ABIE40_RS00085 0.85 -2.5 19,366 - ABIE40_RS00085 0.85 -1.3 19,366 - ABIE40_RS00085 0.85 +0.5 19,473 - +0.2 19,487 + -0.8 19,487 + +0.2 19,501 + -1.5 19,501 + -0.2 19,501 + +0.3 19,501 + -1.3 19,501 + -1.4 19,502 - +0.9 19,502 - -0.3 19,522 + +1.6 19,522 + +1.3 19,522 + -0.7 19,522 + +1.3 19,522 + -0.1 19,522 + -1.9 19,523 - -1.9 19,523 - -1.3 19,523 - +0.5 19,523 - -1.4 19,523 - +0.2 19,523 - +0.7
Or see this region's nucleotide sequence