Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26825 and ABID97_RS26830 are separated by 81 nucleotides ABID97_RS26830 and ABID97_RS26835 are separated by 22 nucleotides ABID97_RS26835 and ABID97_RS26840 are separated by 270 nucleotides
ABID97_RS26825: ABID97_RS26825 - ankyrin repeat domain-containing protein, at 288,813 to 289,730
_RS26825
ABID97_RS26830: ABID97_RS26830 - hypothetical protein, at 289,812 to 290,081
_RS26830
ABID97_RS26835: ABID97_RS26835 - DUF1629 domain-containing protein, at 290,104 to 290,682
_RS26835
ABID97_RS26840: ABID97_RS26840 - hypothetical protein, at 290,953 to 291,168
_RS26840
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1 at 288.864 kb on + strand at 289.175 kb on - strand, within ABID97_RS26825 at 289.599 kb on - strand, within ABID97_RS26825 at 289.696 kb on + strand at 289.732 kb on + strand at 289.793 kb on + strand at 289.794 kb on - strand at 289.922 kb on - strand, within ABID97_RS26830 at 290.388 kb on - strand, within ABID97_RS26835 at 290.398 kb on + strand, within ABID97_RS26835 at 290.884 kb on + strand at 290.885 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 288,864 + -0.3 289,175 - ABID97_RS26825 0.39 -0.2 289,599 - ABID97_RS26825 0.86 -0.3 289,696 + -0.6 289,732 + -0.1 289,793 + -0.6 289,794 - +0.0 289,922 - ABID97_RS26830 0.41 -1.3 290,388 - ABID97_RS26835 0.49 +1.5 290,398 + ABID97_RS26835 0.51 -0.3 290,884 + -0.4 290,885 - -2.2
Or see this region's nucleotide sequence