Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20725

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20715 and ABID97_RS20720 are separated by 69 nucleotidesABID97_RS20720 and ABID97_RS20725 are separated by 9 nucleotidesABID97_RS20725 and ABID97_RS20730 are separated by 19 nucleotidesABID97_RS20730 and ABID97_RS20735 are separated by 119 nucleotides ABID97_RS20715: ABID97_RS20715 - heavy metal translocating P-type ATPase, at 4,277,461 to 4,279,734 _RS20715 ABID97_RS20720: ABID97_RS20720 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 4,279,804 to 4,280,274 _RS20720 ABID97_RS20725: ABID97_RS20725 - serine O-acetyltransferase, at 4,280,284 to 4,281,075 _RS20725 ABID97_RS20730: ABID97_RS20730 - RNA methyltransferase, at 4,281,095 to 4,281,844 _RS20730 ABID97_RS20735: ABID97_RS20735 - inositol monophosphatase family protein, at 4,281,964 to 4,283,025 _RS20735 Position (kb) 4280 4281 4282Strain fitness (log2 ratio) -1 0 1at 4279.763 kb on + strandat 4279.763 kb on + strandat 4279.764 kb on - strandat 4279.779 kb on - strandat 4279.909 kb on + strand, within ABID97_RS20720at 4279.918 kb on + strand, within ABID97_RS20720at 4279.918 kb on + strand, within ABID97_RS20720at 4279.919 kb on - strand, within ABID97_RS20720at 4280.720 kb on + strand, within ABID97_RS20725at 4280.721 kb on - strand, within ABID97_RS20725at 4280.753 kb on + strand, within ABID97_RS20725at 4280.754 kb on - strand, within ABID97_RS20725at 4280.754 kb on - strand, within ABID97_RS20725at 4280.754 kb on - strand, within ABID97_RS20725at 4280.754 kb on - strand, within ABID97_RS20725at 4281.073 kb on + strandat 4281.074 kb on - strandat 4281.075 kb on + strandat 4281.075 kb on + strandat 4281.075 kb on + strandat 4281.076 kb on - strandat 4281.384 kb on + strand, within ABID97_RS20730at 4281.385 kb on - strand, within ABID97_RS20730

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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4,279,763 + +0.6
4,279,763 + -0.5
4,279,764 - +0.1
4,279,779 - -0.0
4,279,909 + ABID97_RS20720 0.22 -0.1
4,279,918 + ABID97_RS20720 0.24 +0.1
4,279,918 + ABID97_RS20720 0.24 -0.3
4,279,919 - ABID97_RS20720 0.24 -0.1
4,280,720 + ABID97_RS20725 0.55 -1.2
4,280,721 - ABID97_RS20725 0.55 +0.8
4,280,753 + ABID97_RS20725 0.59 -0.2
4,280,754 - ABID97_RS20725 0.59 -0.6
4,280,754 - ABID97_RS20725 0.59 -1.7
4,280,754 - ABID97_RS20725 0.59 -1.2
4,280,754 - ABID97_RS20725 0.59 -1.0
4,281,073 + -0.3
4,281,074 - -0.4
4,281,075 + +1.5
4,281,075 + -0.0
4,281,075 + -0.3
4,281,076 - +0.3
4,281,384 + ABID97_RS20730 0.39 -0.2
4,281,385 - ABID97_RS20730 0.39 -0.4

Or see this region's nucleotide sequence