Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20715 and ABID97_RS20720 are separated by 69 nucleotides ABID97_RS20720 and ABID97_RS20725 are separated by 9 nucleotides ABID97_RS20725 and ABID97_RS20730 are separated by 19 nucleotides ABID97_RS20730 and ABID97_RS20735 are separated by 119 nucleotides
ABID97_RS20715: ABID97_RS20715 - heavy metal translocating P-type ATPase, at 4,277,461 to 4,279,734
_RS20715
ABID97_RS20720: ABID97_RS20720 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 4,279,804 to 4,280,274
_RS20720
ABID97_RS20725: ABID97_RS20725 - serine O-acetyltransferase, at 4,280,284 to 4,281,075
_RS20725
ABID97_RS20730: ABID97_RS20730 - RNA methyltransferase, at 4,281,095 to 4,281,844
_RS20730
ABID97_RS20735: ABID97_RS20735 - inositol monophosphatase family protein, at 4,281,964 to 4,283,025
_RS20735
Position (kb)
4280
4281
4282 Strain fitness (log2 ratio)
-1
0
1 at 4279.763 kb on + strand at 4279.763 kb on + strand at 4279.764 kb on - strand at 4279.779 kb on - strand at 4279.909 kb on + strand, within ABID97_RS20720 at 4279.918 kb on + strand, within ABID97_RS20720 at 4279.918 kb on + strand, within ABID97_RS20720 at 4279.919 kb on - strand, within ABID97_RS20720 at 4280.720 kb on + strand, within ABID97_RS20725 at 4280.721 kb on - strand, within ABID97_RS20725 at 4280.753 kb on + strand, within ABID97_RS20725 at 4280.754 kb on - strand, within ABID97_RS20725 at 4280.754 kb on - strand, within ABID97_RS20725 at 4280.754 kb on - strand, within ABID97_RS20725 at 4280.754 kb on - strand, within ABID97_RS20725 at 4281.073 kb on + strand at 4281.074 kb on - strand at 4281.075 kb on + strand at 4281.075 kb on + strand at 4281.075 kb on + strand at 4281.076 kb on - strand at 4281.384 kb on + strand, within ABID97_RS20730 at 4281.385 kb on - strand, within ABID97_RS20730
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 4,279,763 + +0.6 4,279,763 + -0.5 4,279,764 - +0.1 4,279,779 - -0.0 4,279,909 + ABID97_RS20720 0.22 -0.1 4,279,918 + ABID97_RS20720 0.24 +0.1 4,279,918 + ABID97_RS20720 0.24 -0.3 4,279,919 - ABID97_RS20720 0.24 -0.1 4,280,720 + ABID97_RS20725 0.55 -1.2 4,280,721 - ABID97_RS20725 0.55 +0.8 4,280,753 + ABID97_RS20725 0.59 -0.2 4,280,754 - ABID97_RS20725 0.59 -0.6 4,280,754 - ABID97_RS20725 0.59 -1.7 4,280,754 - ABID97_RS20725 0.59 -1.2 4,280,754 - ABID97_RS20725 0.59 -1.0 4,281,073 + -0.3 4,281,074 - -0.4 4,281,075 + +1.5 4,281,075 + -0.0 4,281,075 + -0.3 4,281,076 - +0.3 4,281,384 + ABID97_RS20730 0.39 -0.2 4,281,385 - ABID97_RS20730 0.39 -0.4
Or see this region's nucleotide sequence