Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19290 and ABID97_RS19295 are separated by 19 nucleotides ABID97_RS19295 and ABID97_RS19300 are separated by 255 nucleotides ABID97_RS19300 and ABID97_RS19305 are separated by 38 nucleotides
ABID97_RS19290: ABID97_RS19290 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 3,982,647 to 3,983,948
_RS19290
ABID97_RS19295: ABID97_RS19295 - class A beta-lactamase, at 3,983,968 to 3,984,861
_RS19295
ABID97_RS19300: ABID97_RS19300 - CDP-alcohol phosphatidyltransferase family protein, at 3,985,117 to 3,985,755
_RS19300
ABID97_RS19305: ABID97_RS19305 - glutathione S-transferase family protein, at 3,985,794 to 3,986,366
_RS19305
Position (kb)
3983
3984
3985 Strain fitness (log2 ratio)
-1
0
1 at 3983.584 kb on - strand, within ABID97_RS19290 at 3983.665 kb on - strand, within ABID97_RS19290 at 3983.790 kb on + strand, within ABID97_RS19290 at 3983.790 kb on + strand, within ABID97_RS19290 at 3983.790 kb on + strand, within ABID97_RS19290 at 3983.790 kb on + strand, within ABID97_RS19290 at 3983.790 kb on + strand, within ABID97_RS19290 at 3983.790 kb on + strand, within ABID97_RS19290 at 3983.946 kb on + strand at 3983.947 kb on - strand at 3984.125 kb on + strand, within ABID97_RS19295 at 3984.458 kb on + strand, within ABID97_RS19295 at 3984.555 kb on - strand, within ABID97_RS19295 at 3985.471 kb on + strand, within ABID97_RS19300 at 3985.472 kb on - strand, within ABID97_RS19300 at 3985.556 kb on - strand, within ABID97_RS19300 at 3985.804 kb on - strand at 3985.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,983,584 - ABID97_RS19290 0.72 +0.6 3,983,665 - ABID97_RS19290 0.78 +0.1 3,983,790 + ABID97_RS19290 0.88 +0.8 3,983,790 + ABID97_RS19290 0.88 -0.2 3,983,790 + ABID97_RS19290 0.88 +0.4 3,983,790 + ABID97_RS19290 0.88 -0.5 3,983,790 + ABID97_RS19290 0.88 +0.1 3,983,790 + ABID97_RS19290 0.88 -0.0 3,983,946 + -0.3 3,983,947 - +0.7 3,984,125 + ABID97_RS19295 0.18 -0.2 3,984,458 + ABID97_RS19295 0.55 -1.3 3,984,555 - ABID97_RS19295 0.66 -0.4 3,985,471 + ABID97_RS19300 0.55 +0.0 3,985,472 - ABID97_RS19300 0.56 +0.1 3,985,556 - ABID97_RS19300 0.69 +0.3 3,985,804 - -0.4 3,985,804 - -0.1
Or see this region's nucleotide sequence