Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19295

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19290 and ABID97_RS19295 are separated by 19 nucleotidesABID97_RS19295 and ABID97_RS19300 are separated by 255 nucleotidesABID97_RS19300 and ABID97_RS19305 are separated by 38 nucleotides ABID97_RS19290: ABID97_RS19290 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 3,982,647 to 3,983,948 _RS19290 ABID97_RS19295: ABID97_RS19295 - class A beta-lactamase, at 3,983,968 to 3,984,861 _RS19295 ABID97_RS19300: ABID97_RS19300 - CDP-alcohol phosphatidyltransferase family protein, at 3,985,117 to 3,985,755 _RS19300 ABID97_RS19305: ABID97_RS19305 - glutathione S-transferase family protein, at 3,985,794 to 3,986,366 _RS19305 Position (kb) 3983 3984 3985Strain fitness (log2 ratio) -1 0 1at 3983.584 kb on - strand, within ABID97_RS19290at 3983.665 kb on - strand, within ABID97_RS19290at 3983.790 kb on + strand, within ABID97_RS19290at 3983.790 kb on + strand, within ABID97_RS19290at 3983.790 kb on + strand, within ABID97_RS19290at 3983.790 kb on + strand, within ABID97_RS19290at 3983.790 kb on + strand, within ABID97_RS19290at 3983.790 kb on + strand, within ABID97_RS19290at 3983.946 kb on + strandat 3983.947 kb on - strandat 3984.125 kb on + strand, within ABID97_RS19295at 3984.458 kb on + strand, within ABID97_RS19295at 3984.555 kb on - strand, within ABID97_RS19295at 3985.471 kb on + strand, within ABID97_RS19300at 3985.472 kb on - strand, within ABID97_RS19300at 3985.556 kb on - strand, within ABID97_RS19300at 3985.804 kb on - strandat 3985.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,983,584 - ABID97_RS19290 0.72 +0.6
3,983,665 - ABID97_RS19290 0.78 +0.1
3,983,790 + ABID97_RS19290 0.88 +0.8
3,983,790 + ABID97_RS19290 0.88 -0.2
3,983,790 + ABID97_RS19290 0.88 +0.4
3,983,790 + ABID97_RS19290 0.88 -0.5
3,983,790 + ABID97_RS19290 0.88 +0.1
3,983,790 + ABID97_RS19290 0.88 -0.0
3,983,946 + -0.3
3,983,947 - +0.7
3,984,125 + ABID97_RS19295 0.18 -0.2
3,984,458 + ABID97_RS19295 0.55 -1.3
3,984,555 - ABID97_RS19295 0.66 -0.4
3,985,471 + ABID97_RS19300 0.55 +0.0
3,985,472 - ABID97_RS19300 0.56 +0.1
3,985,556 - ABID97_RS19300 0.69 +0.3
3,985,804 - -0.4
3,985,804 - -0.1

Or see this region's nucleotide sequence