Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17980

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17970 and ABID97_RS17975 are separated by 15 nucleotidesABID97_RS17975 and ABID97_RS17980 are separated by 3 nucleotidesABID97_RS17980 and ABID97_RS17985 are separated by 41 nucleotides ABID97_RS17970: ABID97_RS17970 - protein TolQ, at 3,712,612 to 3,713,334 _RS17970 ABID97_RS17975: ABID97_RS17975 - biopolymer transporter ExbD, at 3,713,350 to 3,713,787 _RS17975 ABID97_RS17980: ABID97_RS17980 - cell envelope integrity protein TolA, at 3,713,791 to 3,714,711 _RS17980 ABID97_RS17985: ABID97_RS17985 - DNA polymerase III subunit alpha, at 3,714,753 to 3,718,271 _RS17985 Position (kb) 3713 3714 3715Strain fitness (log2 ratio) -2 -1 0 1at 3712.883 kb on - strand, within ABID97_RS17970at 3713.029 kb on + strand, within ABID97_RS17970at 3713.239 kb on + strand, within ABID97_RS17970at 3713.239 kb on + strand, within ABID97_RS17970at 3713.240 kb on - strand, within ABID97_RS17970at 3713.699 kb on - strand, within ABID97_RS17975at 3713.785 kb on + strandat 3713.785 kb on + strandat 3713.786 kb on - strandat 3713.786 kb on - strandat 3713.786 kb on - strandat 3713.786 kb on - strandat 3713.786 kb on - strandat 3714.448 kb on + strand, within ABID97_RS17980

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,712,883 - ABID97_RS17970 0.37 -0.3
3,713,029 + ABID97_RS17970 0.58 -2.0
3,713,239 + ABID97_RS17970 0.87 -2.2
3,713,239 + ABID97_RS17970 0.87 -1.0
3,713,240 - ABID97_RS17970 0.87 -1.0
3,713,699 - ABID97_RS17975 0.80 +0.6
3,713,785 + -0.3
3,713,785 + -0.2
3,713,786 - -0.5
3,713,786 - -1.5
3,713,786 - -0.6
3,713,786 - -0.6
3,713,786 - -1.0
3,714,448 + ABID97_RS17980 0.71 -1.1

Or see this region's nucleotide sequence