Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17330

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17320 and ABID97_RS17325 are separated by 60 nucleotidesABID97_RS17325 and ABID97_RS17330 overlap by 4 nucleotidesABID97_RS17330 and ABID97_RS17335 are separated by 5 nucleotides ABID97_RS17320: ABID97_RS17320 - SDR family NAD(P)-dependent oxidoreductase, at 3,578,089 to 3,578,985 _RS17320 ABID97_RS17325: ABID97_RS17325 - histidine phosphatase family protein, at 3,579,046 to 3,579,597 _RS17325 ABID97_RS17330: ABID97_RS17330 - adenosylcobinamide-GDP ribazoletransferase, at 3,579,594 to 3,580,388 _RS17330 ABID97_RS17335: ABID97_RS17335 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 3,580,394 to 3,581,443 _RS17335 Position (kb) 3579 3580 3581Strain fitness (log2 ratio) -2 -1 0 1at 3578.750 kb on - strand, within ABID97_RS17320at 3578.825 kb on + strand, within ABID97_RS17320at 3578.826 kb on - strand, within ABID97_RS17320at 3578.826 kb on - strand, within ABID97_RS17320at 3578.867 kb on + strand, within ABID97_RS17320at 3578.867 kb on + strand, within ABID97_RS17320at 3578.867 kb on + strand, within ABID97_RS17320at 3579.619 kb on + strandat 3579.620 kb on - strandat 3579.620 kb on - strandat 3579.878 kb on - strand, within ABID97_RS17330at 3580.146 kb on + strand, within ABID97_RS17330at 3580.369 kb on + strandat 3580.370 kb on - strandat 3580.370 kb on - strandat 3580.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,578,750 - ABID97_RS17320 0.74 -0.6
3,578,825 + ABID97_RS17320 0.82 +0.3
3,578,826 - ABID97_RS17320 0.82 +0.1
3,578,826 - ABID97_RS17320 0.82 -0.2
3,578,867 + ABID97_RS17320 0.87 +0.6
3,578,867 + ABID97_RS17320 0.87 +1.1
3,578,867 + ABID97_RS17320 0.87 +0.2
3,579,619 + -0.8
3,579,620 - -0.3
3,579,620 - +0.1
3,579,878 - ABID97_RS17330 0.36 -0.5
3,580,146 + ABID97_RS17330 0.69 -2.3
3,580,369 + -1.3
3,580,370 - +0.5
3,580,370 - +0.4
3,580,370 - -0.4

Or see this region's nucleotide sequence