Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17320 and ABID97_RS17325 are separated by 60 nucleotides ABID97_RS17325 and ABID97_RS17330 overlap by 4 nucleotides ABID97_RS17330 and ABID97_RS17335 are separated by 5 nucleotides
ABID97_RS17320: ABID97_RS17320 - SDR family NAD(P)-dependent oxidoreductase, at 3,578,089 to 3,578,985
_RS17320
ABID97_RS17325: ABID97_RS17325 - histidine phosphatase family protein, at 3,579,046 to 3,579,597
_RS17325
ABID97_RS17330: ABID97_RS17330 - adenosylcobinamide-GDP ribazoletransferase, at 3,579,594 to 3,580,388
_RS17330
ABID97_RS17335: ABID97_RS17335 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 3,580,394 to 3,581,443
_RS17335
Position (kb)
3579
3580
3581 Strain fitness (log2 ratio)
-2
-1
0
1 at 3578.750 kb on - strand, within ABID97_RS17320 at 3578.825 kb on + strand, within ABID97_RS17320 at 3578.826 kb on - strand, within ABID97_RS17320 at 3578.826 kb on - strand, within ABID97_RS17320 at 3578.867 kb on + strand, within ABID97_RS17320 at 3578.867 kb on + strand, within ABID97_RS17320 at 3578.867 kb on + strand, within ABID97_RS17320 at 3579.619 kb on + strand at 3579.620 kb on - strand at 3579.620 kb on - strand at 3579.878 kb on - strand, within ABID97_RS17330 at 3580.146 kb on + strand, within ABID97_RS17330 at 3580.369 kb on + strand at 3580.370 kb on - strand at 3580.370 kb on - strand at 3580.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,578,750 - ABID97_RS17320 0.74 -0.6 3,578,825 + ABID97_RS17320 0.82 +0.3 3,578,826 - ABID97_RS17320 0.82 +0.1 3,578,826 - ABID97_RS17320 0.82 -0.2 3,578,867 + ABID97_RS17320 0.87 +0.6 3,578,867 + ABID97_RS17320 0.87 +1.1 3,578,867 + ABID97_RS17320 0.87 +0.2 3,579,619 + -0.8 3,579,620 - -0.3 3,579,620 - +0.1 3,579,878 - ABID97_RS17330 0.36 -0.5 3,580,146 + ABID97_RS17330 0.69 -2.3 3,580,369 + -1.3 3,580,370 - +0.5 3,580,370 - +0.4 3,580,370 - -0.4
Or see this region's nucleotide sequence