Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16775 and ABID97_RS16780 overlap by 4 nucleotides ABID97_RS16780 and ABID97_RS16785 overlap by 1 nucleotides ABID97_RS16785 and ABID97_RS16790 overlap by 4 nucleotides ABID97_RS16790 and ABID97_RS16795 overlap by 29 nucleotides
ABID97_RS16775: ABID97_RS16775 - class I SAM-dependent methyltransferase, at 3,469,140 to 3,469,904
_RS16775
ABID97_RS16780: ABID97_RS16780 - polysaccharide deacetylase family protein, at 3,469,901 to 3,470,743
_RS16780
ABID97_RS16785: ABID97_RS16785 - transporter, at 3,470,743 to 3,473,142
_RS16785
ABID97_RS16790: ABID97_RS16790 - LolA-related protein, at 3,473,139 to 3,473,777
_RS16790
ABID97_RS16795: ABID97_RS16795 - acyl-CoA synthetase, at 3,473,749 to 3,474,747
_RS16795
Position (kb)
3470
3471
3472
3473
3474 Strain fitness (log2 ratio)
-1
0
1 at 3469.834 kb on + strand at 3469.976 kb on + strand at 3469.976 kb on + strand at 3469.988 kb on + strand, within ABID97_RS16780 at 3471.890 kb on + strand, within ABID97_RS16785 at 3472.146 kb on - strand, within ABID97_RS16785 at 3472.148 kb on + strand, within ABID97_RS16785 at 3472.148 kb on + strand, within ABID97_RS16785 at 3472.149 kb on - strand, within ABID97_RS16785 at 3473.795 kb on + strand at 3473.796 kb on - strand at 3473.796 kb on - strand at 3473.927 kb on + strand, within ABID97_RS16795 at 3473.927 kb on + strand, within ABID97_RS16795 at 3473.928 kb on - strand, within ABID97_RS16795 at 3473.928 kb on - strand, within ABID97_RS16795 at 3473.945 kb on + strand, within ABID97_RS16795 at 3473.946 kb on - strand, within ABID97_RS16795 at 3473.946 kb on - strand, within ABID97_RS16795
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,469,834 + +0.1 3,469,976 + +0.0 3,469,976 + +0.5 3,469,988 + ABID97_RS16780 0.10 +0.7 3,471,890 + ABID97_RS16785 0.48 -0.9 3,472,146 - ABID97_RS16785 0.58 -0.8 3,472,148 + ABID97_RS16785 0.59 -1.2 3,472,148 + ABID97_RS16785 0.59 -1.7 3,472,149 - ABID97_RS16785 0.59 -0.5 3,473,795 + +0.3 3,473,796 - +0.6 3,473,796 - +0.6 3,473,927 + ABID97_RS16795 0.18 +0.7 3,473,927 + ABID97_RS16795 0.18 +0.4 3,473,928 - ABID97_RS16795 0.18 -0.3 3,473,928 - ABID97_RS16795 0.18 -0.4 3,473,945 + ABID97_RS16795 0.20 +0.4 3,473,946 - ABID97_RS16795 0.20 -0.5 3,473,946 - ABID97_RS16795 0.20 +0.2
Or see this region's nucleotide sequence