Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16785

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16775 and ABID97_RS16780 overlap by 4 nucleotidesABID97_RS16780 and ABID97_RS16785 overlap by 1 nucleotidesABID97_RS16785 and ABID97_RS16790 overlap by 4 nucleotidesABID97_RS16790 and ABID97_RS16795 overlap by 29 nucleotides ABID97_RS16775: ABID97_RS16775 - class I SAM-dependent methyltransferase, at 3,469,140 to 3,469,904 _RS16775 ABID97_RS16780: ABID97_RS16780 - polysaccharide deacetylase family protein, at 3,469,901 to 3,470,743 _RS16780 ABID97_RS16785: ABID97_RS16785 - transporter, at 3,470,743 to 3,473,142 _RS16785 ABID97_RS16790: ABID97_RS16790 - LolA-related protein, at 3,473,139 to 3,473,777 _RS16790 ABID97_RS16795: ABID97_RS16795 - acyl-CoA synthetase, at 3,473,749 to 3,474,747 _RS16795 Position (kb) 3470 3471 3472 3473 3474Strain fitness (log2 ratio) -1 0 1at 3469.834 kb on + strandat 3469.976 kb on + strandat 3469.976 kb on + strandat 3469.988 kb on + strand, within ABID97_RS16780at 3471.890 kb on + strand, within ABID97_RS16785at 3472.146 kb on - strand, within ABID97_RS16785at 3472.148 kb on + strand, within ABID97_RS16785at 3472.148 kb on + strand, within ABID97_RS16785at 3472.149 kb on - strand, within ABID97_RS16785at 3473.795 kb on + strandat 3473.796 kb on - strandat 3473.796 kb on - strandat 3473.927 kb on + strand, within ABID97_RS16795at 3473.927 kb on + strand, within ABID97_RS16795at 3473.928 kb on - strand, within ABID97_RS16795at 3473.928 kb on - strand, within ABID97_RS16795at 3473.945 kb on + strand, within ABID97_RS16795at 3473.946 kb on - strand, within ABID97_RS16795at 3473.946 kb on - strand, within ABID97_RS16795

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,469,834 + +0.1
3,469,976 + +0.0
3,469,976 + +0.5
3,469,988 + ABID97_RS16780 0.10 +0.7
3,471,890 + ABID97_RS16785 0.48 -0.9
3,472,146 - ABID97_RS16785 0.58 -0.8
3,472,148 + ABID97_RS16785 0.59 -1.2
3,472,148 + ABID97_RS16785 0.59 -1.7
3,472,149 - ABID97_RS16785 0.59 -0.5
3,473,795 + +0.3
3,473,796 - +0.6
3,473,796 - +0.6
3,473,927 + ABID97_RS16795 0.18 +0.7
3,473,927 + ABID97_RS16795 0.18 +0.4
3,473,928 - ABID97_RS16795 0.18 -0.3
3,473,928 - ABID97_RS16795 0.18 -0.4
3,473,945 + ABID97_RS16795 0.20 +0.4
3,473,946 - ABID97_RS16795 0.20 -0.5
3,473,946 - ABID97_RS16795 0.20 +0.2

Or see this region's nucleotide sequence