Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16315

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16310 and ABID97_RS16315 are separated by 343 nucleotidesABID97_RS16315 and ABID97_RS16320 are separated by 2 nucleotidesABID97_RS16320 and ABID97_RS16325 overlap by 4 nucleotides ABID97_RS16310: ABID97_RS16310 - adenylate/guanylate cyclase domain-containing protein, at 3,378,815 to 3,379,762 _RS16310 ABID97_RS16315: ABID97_RS16315 - hypothetical protein, at 3,380,106 to 3,380,378 _RS16315 ABID97_RS16320: ABID97_RS16320 - LD-carboxypeptidase, at 3,380,381 to 3,381,343 _RS16320 ABID97_RS16325: ABID97_RS16325 - tRNA adenosine(34) deaminase TadA, at 3,381,340 to 3,382,455 _RS16325 Position (kb) 3380 3381Strain fitness (log2 ratio) -1 0 1at 3379.797 kb on + strandat 3379.797 kb on + strandat 3379.798 kb on - strandat 3379.802 kb on - strandat 3379.802 kb on - strandat 3379.802 kb on - strandat 3379.804 kb on + strandat 3379.804 kb on + strandat 3379.804 kb on + strandat 3379.804 kb on + strandat 3379.804 kb on + strandat 3379.805 kb on - strandat 3379.948 kb on - strandat 3379.999 kb on + strandat 3379.999 kb on + strandat 3380.005 kb on - strandat 3380.005 kb on - strandat 3380.232 kb on + strand, within ABID97_RS16315at 3380.233 kb on - strand, within ABID97_RS16315

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,379,797 + -0.2
3,379,797 + -0.4
3,379,798 - -0.1
3,379,802 - +0.0
3,379,802 - -0.4
3,379,802 - -0.2
3,379,804 + +1.1
3,379,804 + -0.3
3,379,804 + -0.0
3,379,804 + +1.2
3,379,804 + -0.3
3,379,805 - -0.1
3,379,948 - -0.9
3,379,999 + -0.7
3,379,999 + -0.5
3,380,005 - -0.9
3,380,005 - -0.1
3,380,232 + ABID97_RS16315 0.46 -0.6
3,380,233 - ABID97_RS16315 0.47 -1.4

Or see this region's nucleotide sequence