Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16310 and ABID97_RS16315 are separated by 343 nucleotides ABID97_RS16315 and ABID97_RS16320 are separated by 2 nucleotides ABID97_RS16320 and ABID97_RS16325 overlap by 4 nucleotides
ABID97_RS16310: ABID97_RS16310 - adenylate/guanylate cyclase domain-containing protein, at 3,378,815 to 3,379,762
_RS16310
ABID97_RS16315: ABID97_RS16315 - hypothetical protein, at 3,380,106 to 3,380,378
_RS16315
ABID97_RS16320: ABID97_RS16320 - LD-carboxypeptidase, at 3,380,381 to 3,381,343
_RS16320
ABID97_RS16325: ABID97_RS16325 - tRNA adenosine(34) deaminase TadA, at 3,381,340 to 3,382,455
_RS16325
Position (kb)
3380
3381 Strain fitness (log2 ratio)
-1
0
1 at 3379.797 kb on + strand at 3379.797 kb on + strand at 3379.798 kb on - strand at 3379.802 kb on - strand at 3379.802 kb on - strand at 3379.802 kb on - strand at 3379.804 kb on + strand at 3379.804 kb on + strand at 3379.804 kb on + strand at 3379.804 kb on + strand at 3379.804 kb on + strand at 3379.805 kb on - strand at 3379.948 kb on - strand at 3379.999 kb on + strand at 3379.999 kb on + strand at 3380.005 kb on - strand at 3380.005 kb on - strand at 3380.232 kb on + strand, within ABID97_RS16315 at 3380.233 kb on - strand, within ABID97_RS16315
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,379,797 + -0.2 3,379,797 + -0.4 3,379,798 - -0.1 3,379,802 - +0.0 3,379,802 - -0.4 3,379,802 - -0.2 3,379,804 + +1.1 3,379,804 + -0.3 3,379,804 + -0.0 3,379,804 + +1.2 3,379,804 + -0.3 3,379,805 - -0.1 3,379,948 - -0.9 3,379,999 + -0.7 3,379,999 + -0.5 3,380,005 - -0.9 3,380,005 - -0.1 3,380,232 + ABID97_RS16315 0.46 -0.6 3,380,233 - ABID97_RS16315 0.47 -1.4
Or see this region's nucleotide sequence