Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15885 and ABID97_RS15890 overlap by 4 nucleotides ABID97_RS15890 and ABID97_RS15895 are separated by 48 nucleotides ABID97_RS15895 and ABID97_RS15900 are separated by 83 nucleotides ABID97_RS15900 and ABID97_RS15905 are separated by 16 nucleotides
ABID97_RS15885: ABID97_RS15885 - MlaD family protein, at 3,292,211 to 3,293,854
_RS15885
ABID97_RS15890: ABID97_RS15890 - PqiC family protein, at 3,293,851 to 3,294,489
_RS15890
ABID97_RS15895: ABID97_RS15895 - MFS transporter, at 3,294,538 to 3,296,139
_RS15895
ABID97_RS15900: ABID97_RS15900 - VOC family protein, at 3,296,223 to 3,296,699
_RS15900
ABID97_RS15905: ABID97_RS15905 - MATE family efflux transporter, at 3,296,716 to 3,298,140
_RS15905
Position (kb) 3294
3295
3296
3297 Strain fitness (log2 ratio) -1
0
1
2 at 3293.941 kb on + strand, within ABID97_RS15890 at 3293.941 kb on + strand, within ABID97_RS15890 at 3293.942 kb on - strand, within ABID97_RS15890 at 3293.942 kb on - strand, within ABID97_RS15890 at 3293.942 kb on - strand, within ABID97_RS15890 at 3293.942 kb on - strand, within ABID97_RS15890 at 3293.945 kb on - strand, within ABID97_RS15890 at 3294.013 kb on + strand, within ABID97_RS15890 at 3294.013 kb on + strand, within ABID97_RS15890 at 3294.763 kb on + strand, within ABID97_RS15895 at 3294.763 kb on + strand, within ABID97_RS15895 at 3294.763 kb on + strand, within ABID97_RS15895 at 3294.764 kb on - strand, within ABID97_RS15895 at 3294.764 kb on - strand, within ABID97_RS15895 at 3295.243 kb on + strand, within ABID97_RS15895 at 3295.429 kb on + strand, within ABID97_RS15895 at 3295.430 kb on - strand, within ABID97_RS15895 at 3295.430 kb on - strand, within ABID97_RS15895 at 3295.453 kb on + strand, within ABID97_RS15895 at 3295.489 kb on + strand, within ABID97_RS15895 at 3295.667 kb on - strand, within ABID97_RS15895 at 3296.283 kb on + strand, within ABID97_RS15900 at 3296.284 kb on - strand, within ABID97_RS15900 at 3296.424 kb on + strand, within ABID97_RS15900 at 3296.424 kb on + strand, within ABID97_RS15900 at 3296.488 kb on - strand, within ABID97_RS15900 at 3296.488 kb on - strand, within ABID97_RS15900 at 3296.718 kb on - strand at 3296.718 kb on - strand at 3296.759 kb on + strand at 3296.762 kb on + strand at 3296.810 kb on + strand at 3296.810 kb on + strand at 3296.811 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,293,941 + ABID97_RS15890 0.14 -0.0 3,293,941 + ABID97_RS15890 0.14 +0.1 3,293,942 - ABID97_RS15890 0.14 +0.4 3,293,942 - ABID97_RS15890 0.14 +1.0 3,293,942 - ABID97_RS15890 0.14 -0.3 3,293,942 - ABID97_RS15890 0.14 +0.6 3,293,945 - ABID97_RS15890 0.15 -0.4 3,294,013 + ABID97_RS15890 0.25 +0.4 3,294,013 + ABID97_RS15890 0.25 +0.3 3,294,763 + ABID97_RS15895 0.14 +0.7 3,294,763 + ABID97_RS15895 0.14 +0.4 3,294,763 + ABID97_RS15895 0.14 +0.0 3,294,764 - ABID97_RS15895 0.14 +0.1 3,294,764 - ABID97_RS15895 0.14 +1.1 3,295,243 + ABID97_RS15895 0.44 +0.6 3,295,429 + ABID97_RS15895 0.56 +0.1 3,295,430 - ABID97_RS15895 0.56 -0.4 3,295,430 - ABID97_RS15895 0.56 +0.5 3,295,453 + ABID97_RS15895 0.57 +1.4 3,295,489 + ABID97_RS15895 0.59 +2.2 3,295,667 - ABID97_RS15895 0.70 -1.5 3,296,283 + ABID97_RS15900 0.13 +0.7 3,296,284 - ABID97_RS15900 0.13 -0.9 3,296,424 + ABID97_RS15900 0.42 +0.1 3,296,424 + ABID97_RS15900 0.42 +2.4 3,296,488 - ABID97_RS15900 0.56 +0.1 3,296,488 - ABID97_RS15900 0.56 -0.4 3,296,718 - -0.8 3,296,718 - -0.2 3,296,759 + +0.5 3,296,762 + +1.0 3,296,810 + +0.3 3,296,810 + -0.4 3,296,811 - +0.0
Or see this region's nucleotide sequence