Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15150

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15140 and ABID97_RS15145 are separated by 78 nucleotidesABID97_RS15145 and ABID97_RS15150 are separated by 8 nucleotidesABID97_RS15150 and ABID97_RS15155 are separated by 52 nucleotidesABID97_RS15155 and ABID97_RS15160 are separated by 44 nucleotides ABID97_RS15140: ABID97_RS15140 - phage tail tape measure protein, at 3,138,367 to 3,141,051 _RS15140 ABID97_RS15145: ABID97_RS15145 - GpE family phage tail protein, at 3,141,130 to 3,141,246 _RS15145 ABID97_RS15150: ABID97_RS15150 - phage tail assembly protein, at 3,141,255 to 3,141,566 _RS15150 ABID97_RS15155: ABID97_RS15155 - phage major tail tube protein, at 3,141,619 to 3,142,128 _RS15155 ABID97_RS15160: ABID97_RS15160 - phage tail sheath protein, at 3,142,173 to 3,143,351 _RS15160 Position (kb) 3141 3142Strain fitness (log2 ratio) -1 0 1at 3140.415 kb on - strand, within ABID97_RS15140at 3140.757 kb on + strand, within ABID97_RS15140at 3140.758 kb on - strand, within ABID97_RS15140at 3141.132 kb on - strandat 3141.327 kb on + strand, within ABID97_RS15150at 3141.620 kb on + strandat 3141.620 kb on + strandat 3141.731 kb on + strand, within ABID97_RS15155at 3142.074 kb on - strand, within ABID97_RS15155at 3142.100 kb on + strandat 3142.101 kb on - strandat 3142.101 kb on - strandat 3142.101 kb on - strandat 3142.210 kb on + strandat 3142.268 kb on - strandat 3142.354 kb on + strand, within ABID97_RS15160

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,140,415 - ABID97_RS15140 0.76 -0.2
3,140,757 + ABID97_RS15140 0.89 -0.1
3,140,758 - ABID97_RS15140 0.89 -0.2
3,141,132 - -0.3
3,141,327 + ABID97_RS15150 0.23 -1.0
3,141,620 + +0.4
3,141,620 + -0.1
3,141,731 + ABID97_RS15155 0.22 -0.7
3,142,074 - ABID97_RS15155 0.89 -0.6
3,142,100 + -0.0
3,142,101 - -0.1
3,142,101 - +0.4
3,142,101 - +0.2
3,142,210 + -0.1
3,142,268 - +0.4
3,142,354 + ABID97_RS15160 0.15 +0.6

Or see this region's nucleotide sequence