Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15140 and ABID97_RS15145 are separated by 78 nucleotides ABID97_RS15145 and ABID97_RS15150 are separated by 8 nucleotides ABID97_RS15150 and ABID97_RS15155 are separated by 52 nucleotides ABID97_RS15155 and ABID97_RS15160 are separated by 44 nucleotides
ABID97_RS15140: ABID97_RS15140 - phage tail tape measure protein, at 3,138,367 to 3,141,051
_RS15140
ABID97_RS15145: ABID97_RS15145 - GpE family phage tail protein, at 3,141,130 to 3,141,246
_RS15145
ABID97_RS15150: ABID97_RS15150 - phage tail assembly protein, at 3,141,255 to 3,141,566
_RS15150
ABID97_RS15155: ABID97_RS15155 - phage major tail tube protein, at 3,141,619 to 3,142,128
_RS15155
ABID97_RS15160: ABID97_RS15160 - phage tail sheath protein, at 3,142,173 to 3,143,351
_RS15160
Position (kb)
3141
3142 Strain fitness (log2 ratio)
-1
0
1 at 3140.415 kb on - strand, within ABID97_RS15140 at 3140.757 kb on + strand, within ABID97_RS15140 at 3140.758 kb on - strand, within ABID97_RS15140 at 3141.132 kb on - strand at 3141.327 kb on + strand, within ABID97_RS15150 at 3141.620 kb on + strand at 3141.620 kb on + strand at 3141.731 kb on + strand, within ABID97_RS15155 at 3142.074 kb on - strand, within ABID97_RS15155 at 3142.100 kb on + strand at 3142.101 kb on - strand at 3142.101 kb on - strand at 3142.101 kb on - strand at 3142.210 kb on + strand at 3142.268 kb on - strand at 3142.354 kb on + strand, within ABID97_RS15160
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,140,415 - ABID97_RS15140 0.76 -0.2 3,140,757 + ABID97_RS15140 0.89 -0.1 3,140,758 - ABID97_RS15140 0.89 -0.2 3,141,132 - -0.3 3,141,327 + ABID97_RS15150 0.23 -1.0 3,141,620 + +0.4 3,141,620 + -0.1 3,141,731 + ABID97_RS15155 0.22 -0.7 3,142,074 - ABID97_RS15155 0.89 -0.6 3,142,100 + -0.0 3,142,101 - -0.1 3,142,101 - +0.4 3,142,101 - +0.2 3,142,210 + -0.1 3,142,268 - +0.4 3,142,354 + ABID97_RS15160 0.15 +0.6
Or see this region's nucleotide sequence