Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14700

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14690 and ABID97_RS14695 are separated by 97 nucleotidesABID97_RS14695 and ABID97_RS14700 are separated by 7 nucleotidesABID97_RS14700 and ABID97_RS14705 are separated by 46 nucleotidesABID97_RS14705 and ABID97_RS14710 are separated by 159 nucleotides ABID97_RS14690: ABID97_RS14690 - DNA polymerase III subunit gamma/tau, at 3,056,456 to 3,058,309 _RS14690 ABID97_RS14695: ABID97_RS14695 - YbaB/EbfC family nucleoid-associated protein, at 3,058,407 to 3,058,739 _RS14695 ABID97_RS14700: ABID97_RS14700 - recombination mediator RecR, at 3,058,747 to 3,059,337 _RS14700 ABID97_RS14705: ABID97_RS14705 - MAPEG family protein, at 3,059,384 to 3,059,776 _RS14705 ABID97_RS14710: ABID97_RS14710 - ABC transporter substrate-binding protein, at 3,059,936 to 3,060,970 _RS14710 Position (kb) 3058 3059 3060Strain fitness (log2 ratio) -2 -1 0 1 2at 3058.372 kb on - strandat 3058.372 kb on - strandat 3058.372 kb on - strandat 3059.056 kb on + strand, within ABID97_RS14700at 3059.057 kb on - strand, within ABID97_RS14700at 3059.057 kb on - strand, within ABID97_RS14700at 3059.057 kb on - strand, within ABID97_RS14700at 3059.290 kb on + strandat 3059.291 kb on - strandat 3059.291 kb on - strandat 3059.411 kb on + strandat 3059.444 kb on + strand, within ABID97_RS14705at 3059.657 kb on + strand, within ABID97_RS14705at 3059.657 kb on + strand, within ABID97_RS14705at 3059.657 kb on + strand, within ABID97_RS14705at 3059.658 kb on - strand, within ABID97_RS14705at 3059.678 kb on + strand, within ABID97_RS14705at 3059.690 kb on + strand, within ABID97_RS14705at 3059.690 kb on + strand, within ABID97_RS14705at 3059.836 kb on - strandat 3059.959 kb on + strandat 3060.068 kb on + strand, within ABID97_RS14710at 3060.068 kb on + strand, within ABID97_RS14710at 3060.068 kb on + strand, within ABID97_RS14710at 3060.069 kb on - strand, within ABID97_RS14710at 3060.069 kb on - strand, within ABID97_RS14710at 3060.069 kb on - strand, within ABID97_RS14710at 3060.069 kb on - strand, within ABID97_RS14710at 3060.069 kb on - strand, within ABID97_RS14710at 3060.069 kb on - strand, within ABID97_RS14710at 3060.071 kb on + strand, within ABID97_RS14710at 3060.071 kb on + strand, within ABID97_RS14710at 3060.072 kb on - strand, within ABID97_RS14710at 3060.210 kb on - strand, within ABID97_RS14710

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,058,372 - +1.1
3,058,372 - +0.0
3,058,372 - +0.1
3,059,056 + ABID97_RS14700 0.52 -0.9
3,059,057 - ABID97_RS14700 0.52 -1.9
3,059,057 - ABID97_RS14700 0.52 -1.5
3,059,057 - ABID97_RS14700 0.52 -0.5
3,059,290 + -0.8
3,059,291 - +0.5
3,059,291 - -0.7
3,059,411 + +0.2
3,059,444 + ABID97_RS14705 0.15 +1.0
3,059,657 + ABID97_RS14705 0.69 -0.1
3,059,657 + ABID97_RS14705 0.69 -0.1
3,059,657 + ABID97_RS14705 0.69 +0.4
3,059,658 - ABID97_RS14705 0.70 -0.1
3,059,678 + ABID97_RS14705 0.75 +0.2
3,059,690 + ABID97_RS14705 0.78 +2.4
3,059,690 + ABID97_RS14705 0.78 -0.2
3,059,836 - +0.9
3,059,959 + +0.4
3,060,068 + ABID97_RS14710 0.13 -0.2
3,060,068 + ABID97_RS14710 0.13 -0.0
3,060,068 + ABID97_RS14710 0.13 -0.3
3,060,069 - ABID97_RS14710 0.13 +0.3
3,060,069 - ABID97_RS14710 0.13 +0.0
3,060,069 - ABID97_RS14710 0.13 +0.8
3,060,069 - ABID97_RS14710 0.13 -0.1
3,060,069 - ABID97_RS14710 0.13 -0.9
3,060,069 - ABID97_RS14710 0.13 +0.2
3,060,071 + ABID97_RS14710 0.13 +0.0
3,060,071 + ABID97_RS14710 0.13 -0.0
3,060,072 - ABID97_RS14710 0.13 +0.1
3,060,210 - ABID97_RS14710 0.26 -0.3

Or see this region's nucleotide sequence