Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14160

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14155 and ABID97_RS14160 are separated by 4 nucleotidesABID97_RS14160 and ABID97_RS14165 overlap by 4 nucleotidesABID97_RS14165 and ABID97_RS14170 are separated by 30 nucleotides ABID97_RS14155: ABID97_RS14155 - dihydrolipoyl dehydrogenase, at 2,944,231 to 2,945,661 _RS14155 ABID97_RS14160: ABID97_RS14160 - cell division protein ZapE, at 2,945,666 to 2,946,766 _RS14160 ABID97_RS14165: ABID97_RS14165 - hypothetical protein, at 2,946,763 to 2,947,434 _RS14165 ABID97_RS14170: ABID97_RS14170 - protein phosphatase 2C domain-containing protein, at 2,947,465 to 2,948,235 _RS14170 Position (kb) 2945 2946 2947Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2945.687 kb on + strandat 2945.687 kb on + strandat 2945.688 kb on - strandat 2945.849 kb on + strand, within ABID97_RS14160at 2945.849 kb on + strand, within ABID97_RS14160at 2945.849 kb on + strand, within ABID97_RS14160at 2945.850 kb on - strand, within ABID97_RS14160at 2946.035 kb on + strand, within ABID97_RS14160at 2946.035 kb on + strand, within ABID97_RS14160at 2946.036 kb on - strand, within ABID97_RS14160at 2946.296 kb on + strand, within ABID97_RS14160at 2946.297 kb on - strand, within ABID97_RS14160at 2946.297 kb on - strand, within ABID97_RS14160at 2946.297 kb on - strand, within ABID97_RS14160at 2946.297 kb on - strand, within ABID97_RS14160at 2946.297 kb on - strand, within ABID97_RS14160at 2946.297 kb on - strand, within ABID97_RS14160at 2946.485 kb on + strand, within ABID97_RS14160at 2946.596 kb on + strand, within ABID97_RS14160at 2946.650 kb on + strand, within ABID97_RS14160at 2946.651 kb on - strand, within ABID97_RS14160at 2947.101 kb on + strand, within ABID97_RS14165at 2947.589 kb on + strand, within ABID97_RS14170at 2947.590 kb on - strand, within ABID97_RS14170at 2947.622 kb on + strand, within ABID97_RS14170at 2947.623 kb on - strand, within ABID97_RS14170at 2947.682 kb on + strand, within ABID97_RS14170at 2947.682 kb on + strand, within ABID97_RS14170at 2947.683 kb on - strand, within ABID97_RS14170at 2947.683 kb on - strand, within ABID97_RS14170

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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2,945,687 + -1.0
2,945,687 + -2.0
2,945,688 - -3.4
2,945,849 + ABID97_RS14160 0.17 -2.1
2,945,849 + ABID97_RS14160 0.17 -1.6
2,945,849 + ABID97_RS14160 0.17 -0.6
2,945,850 - ABID97_RS14160 0.17 -0.2
2,946,035 + ABID97_RS14160 0.34 -1.6
2,946,035 + ABID97_RS14160 0.34 -1.8
2,946,036 - ABID97_RS14160 0.34 -2.1
2,946,296 + ABID97_RS14160 0.57 -1.7
2,946,297 - ABID97_RS14160 0.57 -1.2
2,946,297 - ABID97_RS14160 0.57 -0.4
2,946,297 - ABID97_RS14160 0.57 -0.6
2,946,297 - ABID97_RS14160 0.57 -1.9
2,946,297 - ABID97_RS14160 0.57 -2.1
2,946,297 - ABID97_RS14160 0.57 -1.6
2,946,485 + ABID97_RS14160 0.74 -2.2
2,946,596 + ABID97_RS14160 0.84 -1.1
2,946,650 + ABID97_RS14160 0.89 -3.0
2,946,651 - ABID97_RS14160 0.89 -1.4
2,947,101 + ABID97_RS14165 0.50 +0.8
2,947,589 + ABID97_RS14170 0.16 -0.5
2,947,590 - ABID97_RS14170 0.16 -0.3
2,947,622 + ABID97_RS14170 0.20 -0.4
2,947,623 - ABID97_RS14170 0.20 +2.8
2,947,682 + ABID97_RS14170 0.28 +0.8
2,947,682 + ABID97_RS14170 0.28 +0.5
2,947,683 - ABID97_RS14170 0.28 +0.0
2,947,683 - ABID97_RS14170 0.28 +0.3

Or see this region's nucleotide sequence