Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12995

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12985 and ABID97_RS12990 are separated by 21 nucleotidesABID97_RS12990 and ABID97_RS12995 are separated by 13 nucleotidesABID97_RS12995 and ABID97_RS13000 are separated by 107 nucleotidesABID97_RS13000 and ABID97_RS13005 are separated by 16 nucleotides ABID97_RS12985: ABID97_RS12985 - DUF4150 domain-containing protein, at 2,697,998 to 2,698,390 _RS12985 ABID97_RS12990: ABID97_RS12990 - hypothetical protein, at 2,698,412 to 2,699,215 _RS12990 ABID97_RS12995: ABID97_RS12995 - hypothetical protein, at 2,699,229 to 2,699,738 _RS12995 ABID97_RS13000: ABID97_RS13000 - type VI secretion system lipoprotein TssJ, at 2,699,846 to 2,700,547 _RS13000 ABID97_RS13005: ABID97_RS13005 - type VI secretion system baseplate subunit TssK, at 2,700,564 to 2,701,952 _RS13005 Position (kb) 2699 2700Strain fitness (log2 ratio) -1 0 1at 2699.314 kb on + strand, within ABID97_RS12995at 2699.314 kb on + strand, within ABID97_RS12995at 2700.276 kb on - strand, within ABID97_RS13000at 2700.356 kb on + strand, within ABID97_RS13000

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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2,699,314 + ABID97_RS12995 0.17 -0.1
2,699,314 + ABID97_RS12995 0.17 -1.4
2,700,276 - ABID97_RS13000 0.61 -0.5
2,700,356 + ABID97_RS13000 0.73 -0.6

Or see this region's nucleotide sequence