Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09365 and ABID97_RS09370 are separated by 96 nucleotides ABID97_RS09370 and ABID97_RS09375 overlap by 4 nucleotides ABID97_RS09375 and ABID97_RS09380 overlap by 4 nucleotides ABID97_RS09380 and ABID97_RS09385 are separated by 116 nucleotides
ABID97_RS09365: ABID97_RS09365 - M81 family metallopeptidase, at 1,968,846 to 1,970,318
_RS09365
ABID97_RS09370: ABID97_RS09370 - ABC transporter permease, at 1,970,415 to 1,971,173
_RS09370
ABID97_RS09375: ABID97_RS09375 - ATP-binding cassette domain-containing protein, at 1,971,170 to 1,971,889
_RS09375
ABID97_RS09380: ABID97_RS09380 - substrate-binding domain-containing protein, at 1,971,886 to 1,972,743
_RS09380
ABID97_RS09385: ABID97_RS09385 - nuclear transport factor 2 family protein, at 1,972,860 to 1,973,237
_RS09385
Position (kb) 1971
1972 Strain fitness (log2 ratio) -1
0
1
2
3 at 1970.184 kb on + strand at 1970.185 kb on - strand at 1970.185 kb on - strand at 1970.185 kb on - strand at 1970.341 kb on + strand at 1970.342 kb on - strand at 1970.342 kb on - strand at 1970.372 kb on - strand at 1970.381 kb on + strand at 1970.875 kb on - strand, within ABID97_RS09370 at 1971.163 kb on + strand at 1971.222 kb on - strand at 1971.785 kb on + strand, within ABID97_RS09375 at 1971.786 kb on - strand, within ABID97_RS09375 at 1972.213 kb on + strand, within ABID97_RS09380 at 1972.213 kb on + strand, within ABID97_RS09380 at 1972.213 kb on + strand, within ABID97_RS09380 at 1972.213 kb on + strand, within ABID97_RS09380 at 1972.489 kb on + strand, within ABID97_RS09380 at 1972.489 kb on + strand, within ABID97_RS09380 at 1972.490 kb on - strand, within ABID97_RS09380 at 1972.490 kb on - strand, within ABID97_RS09380 at 1972.693 kb on + strand at 1972.693 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 1,970,184 + -0.7 1,970,185 - +0.1 1,970,185 - +2.8 1,970,185 - +0.6 1,970,341 + +0.0 1,970,342 - -0.2 1,970,342 - -0.3 1,970,372 - -0.7 1,970,381 + +0.3 1,970,875 - ABID97_RS09370 0.61 +0.5 1,971,163 + -0.4 1,971,222 - -0.3 1,971,785 + ABID97_RS09375 0.85 +0.1 1,971,786 - ABID97_RS09375 0.86 +1.3 1,972,213 + ABID97_RS09380 0.38 -0.2 1,972,213 + ABID97_RS09380 0.38 +0.8 1,972,213 + ABID97_RS09380 0.38 -0.9 1,972,213 + ABID97_RS09380 0.38 +0.0 1,972,489 + ABID97_RS09380 0.70 +0.1 1,972,489 + ABID97_RS09380 0.70 +0.2 1,972,490 - ABID97_RS09380 0.70 -1.0 1,972,490 - ABID97_RS09380 0.70 -0.1 1,972,693 + +0.0 1,972,693 + -0.7
Or see this region's nucleotide sequence