Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07050

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07045 and ABID97_RS07050 are separated by 20 nucleotidesABID97_RS07050 and ABID97_RS07055 overlap by 4 nucleotides ABID97_RS07045: ABID97_RS07045 - ABC transporter permease, at 1,491,651 to 1,492,562 _RS07045 ABID97_RS07050: ABID97_RS07050 - ABC transporter ATP-binding protein, at 1,492,583 to 1,493,653 _RS07050 ABID97_RS07055: ABID97_RS07055 - dipeptide ABC transporter ATP-binding protein, at 1,493,650 to 1,494,678 _RS07055 Position (kb) 1492 1493 1494Strain fitness (log2 ratio) -1 0 1at 1491.867 kb on + strand, within ABID97_RS07045at 1491.867 kb on + strand, within ABID97_RS07045at 1491.867 kb on + strand, within ABID97_RS07045at 1491.867 kb on + strand, within ABID97_RS07045at 1491.868 kb on - strand, within ABID97_RS07045at 1491.919 kb on - strand, within ABID97_RS07045at 1491.919 kb on - strand, within ABID97_RS07045at 1492.233 kb on + strand, within ABID97_RS07045at 1492.233 kb on + strand, within ABID97_RS07045at 1492.233 kb on + strand, within ABID97_RS07045at 1492.234 kb on - strand, within ABID97_RS07045at 1492.234 kb on - strand, within ABID97_RS07045at 1492.440 kb on + strand, within ABID97_RS07045at 1492.440 kb on + strand, within ABID97_RS07045at 1492.440 kb on + strand, within ABID97_RS07045at 1492.440 kb on + strand, within ABID97_RS07045at 1492.440 kb on + strand, within ABID97_RS07045at 1492.898 kb on + strand, within ABID97_RS07050at 1492.898 kb on + strand, within ABID97_RS07050at 1492.898 kb on + strand, within ABID97_RS07050at 1492.898 kb on + strand, within ABID97_RS07050at 1492.899 kb on - strand, within ABID97_RS07050at 1493.264 kb on + strand, within ABID97_RS07050at 1493.264 kb on + strand, within ABID97_RS07050at 1493.264 kb on + strand, within ABID97_RS07050at 1493.265 kb on - strand, within ABID97_RS07050at 1493.265 kb on - strand, within ABID97_RS07050at 1493.265 kb on - strand, within ABID97_RS07050at 1493.327 kb on + strand, within ABID97_RS07050at 1493.327 kb on + strand, within ABID97_RS07050at 1493.328 kb on - strand, within ABID97_RS07050at 1493.328 kb on - strand, within ABID97_RS07050at 1493.329 kb on + strand, within ABID97_RS07050at 1493.330 kb on - strand, within ABID97_RS07050at 1493.438 kb on + strand, within ABID97_RS07050at 1493.439 kb on - strand, within ABID97_RS07050at 1493.439 kb on - strand, within ABID97_RS07050at 1493.893 kb on + strand, within ABID97_RS07055at 1493.893 kb on + strand, within ABID97_RS07055at 1494.008 kb on - strand, within ABID97_RS07055at 1494.329 kb on - strand, within ABID97_RS07055at 1494.329 kb on - strand, within ABID97_RS07055at 1494.391 kb on + strand, within ABID97_RS07055at 1494.391 kb on + strand, within ABID97_RS07055at 1494.392 kb on - strand, within ABID97_RS07055at 1494.392 kb on - strand, within ABID97_RS07055at 1494.392 kb on - strand, within ABID97_RS07055at 1494.454 kb on + strand, within ABID97_RS07055at 1494.457 kb on - strand, within ABID97_RS07055

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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1,491,867 + ABID97_RS07045 0.24 +0.2
1,491,867 + ABID97_RS07045 0.24 -0.6
1,491,867 + ABID97_RS07045 0.24 -0.7
1,491,867 + ABID97_RS07045 0.24 -0.9
1,491,868 - ABID97_RS07045 0.24 +1.6
1,491,919 - ABID97_RS07045 0.29 -0.3
1,491,919 - ABID97_RS07045 0.29 -0.1
1,492,233 + ABID97_RS07045 0.64 +0.4
1,492,233 + ABID97_RS07045 0.64 +0.2
1,492,233 + ABID97_RS07045 0.64 -0.4
1,492,234 - ABID97_RS07045 0.64 -0.0
1,492,234 - ABID97_RS07045 0.64 +0.9
1,492,440 + ABID97_RS07045 0.87 +0.2
1,492,440 + ABID97_RS07045 0.87 -0.5
1,492,440 + ABID97_RS07045 0.87 -0.2
1,492,440 + ABID97_RS07045 0.87 +0.7
1,492,440 + ABID97_RS07045 0.87 +0.1
1,492,898 + ABID97_RS07050 0.29 -0.2
1,492,898 + ABID97_RS07050 0.29 +0.0
1,492,898 + ABID97_RS07050 0.29 +0.4
1,492,898 + ABID97_RS07050 0.29 -0.1
1,492,899 - ABID97_RS07050 0.30 -0.4
1,493,264 + ABID97_RS07050 0.64 -0.8
1,493,264 + ABID97_RS07050 0.64 -0.3
1,493,264 + ABID97_RS07050 0.64 -0.8
1,493,265 - ABID97_RS07050 0.64 -0.2
1,493,265 - ABID97_RS07050 0.64 -0.0
1,493,265 - ABID97_RS07050 0.64 -0.4
1,493,327 + ABID97_RS07050 0.69 +0.4
1,493,327 + ABID97_RS07050 0.69 -0.0
1,493,328 - ABID97_RS07050 0.70 -0.6
1,493,328 - ABID97_RS07050 0.70 -0.3
1,493,329 + ABID97_RS07050 0.70 -0.3
1,493,330 - ABID97_RS07050 0.70 -0.4
1,493,438 + ABID97_RS07050 0.80 -1.5
1,493,439 - ABID97_RS07050 0.80 -0.7
1,493,439 - ABID97_RS07050 0.80 +0.4
1,493,893 + ABID97_RS07055 0.24 +0.3
1,493,893 + ABID97_RS07055 0.24 -0.8
1,494,008 - ABID97_RS07055 0.35 +0.1
1,494,329 - ABID97_RS07055 0.66 +0.7
1,494,329 - ABID97_RS07055 0.66 -0.3
1,494,391 + ABID97_RS07055 0.72 +0.2
1,494,391 + ABID97_RS07055 0.72 +0.3
1,494,392 - ABID97_RS07055 0.72 +0.4
1,494,392 - ABID97_RS07055 0.72 -0.6
1,494,392 - ABID97_RS07055 0.72 -0.0
1,494,454 + ABID97_RS07055 0.78 +1.5
1,494,457 - ABID97_RS07055 0.78 -0.1

Or see this region's nucleotide sequence