Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01015

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01010 and ABID97_RS01015 are separated by 13 nucleotidesABID97_RS01015 and ABID97_RS01020 are separated by 13 nucleotides ABID97_RS01010: ABID97_RS01010 - DUF4118 domain-containing protein, at 203,163 to 205,907 _RS01010 ABID97_RS01015: ABID97_RS01015 - potassium-transporting ATPase subunit KdpC, at 205,921 to 206,502 _RS01015 ABID97_RS01020: ABID97_RS01020 - potassium-transporting ATPase subunit KdpB, at 206,516 to 208,606 _RS01020 Position (kb) 205 206 207Strain fitness (log2 ratio) -1 0 1at 205.021 kb on + strand, within ABID97_RS01010at 205.021 kb on + strand, within ABID97_RS01010at 205.022 kb on - strand, within ABID97_RS01010at 205.312 kb on + strand, within ABID97_RS01010at 206.271 kb on - strand, within ABID97_RS01015at 206.595 kb on + strandat 206.596 kb on - strandat 206.596 kb on - strandat 206.805 kb on + strand, within ABID97_RS01020at 206.806 kb on - strand, within ABID97_RS01020at 207.048 kb on + strand, within ABID97_RS01020at 207.048 kb on + strand, within ABID97_RS01020at 207.048 kb on + strand, within ABID97_RS01020

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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205,021 + ABID97_RS01010 0.68 +0.5
205,021 + ABID97_RS01010 0.68 +0.2
205,022 - ABID97_RS01010 0.68 +0.7
205,312 + ABID97_RS01010 0.78 +0.0
206,271 - ABID97_RS01015 0.60 +1.0
206,595 + -1.3
206,596 - -0.3
206,596 - -0.2
206,805 + ABID97_RS01020 0.14 +1.0
206,806 - ABID97_RS01020 0.14 +1.0
207,048 + ABID97_RS01020 0.25 +0.4
207,048 + ABID97_RS01020 0.25 -0.2
207,048 + ABID97_RS01020 0.25 +0.2

Or see this region's nucleotide sequence