Strain Fitness in Pseudomonas putida KT2440 around PP_5740

Experiment: 4-Hydroxyvalerate (C) (40mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyvalerate (C) (40mM)
6,159,536	+				+0.3
6,159,536	+				-1.7
6,159,591	+				+1.5
6,159,594	+				-0.0
6,159,594	+				+0.3
6,159,594	+				+1.5
6,159,594	+				-1.0
6,159,594	+				+0.1
6,159,594	+				+1.1
6,159,594	+				-0.5
6,159,594	+				-0.5
6,159,595	-				+0.2
6,159,595	-				+0.6
6,159,595	-				+0.8
6,159,595	-				+0.4
6,159,595	-				+0.4
6,159,621	+		PP_5402	0.11	+0.6
6,159,621	+		PP_5402	0.11	+0.3
6,159,621	+		PP_5402	0.11	-0.5
6,159,621	+		PP_5402	0.11	-0.2
6,159,622	-		PP_5402	0.12	+0.3
6,159,622	-		PP_5402	0.12	+0.9
6,159,622	-		PP_5402	0.12	-1.3
6,159,622	-		PP_5402	0.12	-0.1
6,159,622	-		PP_5402	0.12	+0.6
6,159,695	+		PP_5402	0.21	-0.1
6,159,774	+		PP_5402	0.31	+1.0
6,159,774	+		PP_5402	0.31	-0.6
6,159,774	+		PP_5402	0.31	+1.0
6,159,774	+		PP_5402	0.31	-0.8
6,159,775	-		PP_5402	0.31	-0.1
6,159,794	+		PP_5402	0.33	+0.6
6,159,794	+		PP_5402	0.33	+0.1
6,159,795	-		PP_5402	0.33	+0.5
6,159,845	+		PP_5402	0.40	+0.2
6,159,855	-		PP_5402	0.41	-0.1
6,160,023	-		PP_5402	0.62	+1.2
6,160,032	+		PP_5402	0.63	+0.5
6,160,032	+		PP_5402	0.63	+0.2
6,160,032	+		PP_5402	0.63	+0.0
6,160,033	-		PP_5402	0.64	-1.4
6,160,064	+		PP_5402	0.68	+0.2
6,160,064	+		PP_5402	0.68	+0.6
6,160,064	+		PP_5402	0.68	-0.1
6,160,065	-		PP_5402	0.68	-0.8
6,160,065	-		PP_5402	0.68	-0.1
6,160,065	-		PP_5402	0.68	-0.0
6,160,065	-		PP_5402	0.68	-1.3
6,160,065	-		PP_5402	0.68	-0.1
6,160,065	-		PP_5402	0.68	-0.2
6,160,068	+		PP_5402	0.68	+0.3
6,160,068	+		PP_5402	0.68	+0.4
6,160,068	+		PP_5402	0.68	+0.0
6,160,068	+		PP_5402	0.68	+0.3
6,160,068	+		PP_5402	0.68	+0.1
6,160,068	+		PP_5402	0.68	-0.5
6,160,069	-		PP_5402	0.68	-0.1
6,160,069	-		PP_5402	0.68	+0.1
6,160,069	-		PP_5402	0.68	+1.1
6,160,069	-		PP_5402	0.68	+0.9
6,160,069	-		PP_5402	0.68	-0.7
6,160,098	+		PP_5402	0.72	-1.4
6,160,098	+		PP_5402	0.72	+0.8
6,160,098	+		PP_5402	0.72	+0.5
6,160,120	+		PP_5402	0.75	-0.4
6,160,120	+		PP_5402	0.75	+0.7
6,160,120	+		PP_5402	0.75	-0.2
6,160,121	-		PP_5402	0.75	+0.6
6,160,359	+				-0.9
6,160,388	+				-0.7
6,160,389	-				-0.3
6,160,389	-				+0.0
6,160,389	-				-0.8
6,160,441	-				-0.1
6,160,492	+				-0.8
6,160,493	-				-0.3
6,160,499	-				+0.8
6,160,504	+				+0.9
6,160,526	+				+1.3
6,160,526	+				+0.4
6,160,526	+				+0.1
6,160,526	+				-0.2
6,160,526	+				+0.8
6,160,526	+				+1.0
6,160,527	-				-0.2
6,160,527	-				-0.8
6,160,527	-				-0.3
6,160,527	-				+1.3
6,160,527	-				+0.0
6,160,527	-				+0.2
6,160,607	+		PP_5740	0.12	-0.1
6,160,607	+		PP_5740	0.12	-0.4
6,160,650	+		PP_5740	0.19	-0.7
6,160,651	-		PP_5740	0.19	-1.8
6,160,651	-		PP_5740	0.19	+0.4
6,160,651	-		PP_5740	0.19	-0.1
6,160,671	+		PP_5740	0.22	+0.7
6,160,671	+		PP_5740	0.22	-1.1
6,160,671	+		PP_5740	0.22	-0.8
6,160,671	+		PP_5740	0.22	+0.8
6,160,671	+		PP_5740	0.22	+0.4
6,160,672	-		PP_5740	0.22	-2.3
6,160,672	-		PP_5740	0.22	-0.7
6,160,672	-		PP_5740	0.22	-0.9
6,160,682	-		PP_5740	0.24	-0.2
6,160,705	-		PP_5740	0.27	-1.1
6,160,705	-		PP_5740	0.27	-1.1
6,160,720	+		PP_5740	0.29	-0.3
6,160,720	+		PP_5740	0.29	+0.1
6,160,720	+		PP_5740	0.29	+0.4
6,160,721	-		PP_5740	0.30	-0.1
6,160,721	-		PP_5740	0.30	-0.4
6,160,721	-		PP_5740	0.30	-0.3
6,160,835	-		PP_5740	0.47	+0.7
6,160,865	+		PP_5740	0.51	+0.2
6,160,865	+		PP_5740	0.51	-0.1
6,160,865	+		PP_5740	0.51	-0.3
6,160,865	+		PP_5740	0.51	-0.4
6,160,865	+		PP_5740	0.51	+0.7
6,160,865	+		PP_5740	0.51	-0.1
6,160,865	+		PP_5740	0.51	-0.8
6,160,866	-		PP_5740	0.52	+0.4
6,160,866	-		PP_5740	0.52	-1.3
6,160,866	-		PP_5740	0.52	-0.5
6,160,866	-		PP_5740	0.52	-2.0
6,160,866	-		PP_5740	0.52	+0.5
6,160,866	-				+0.5
6,160,866	-		PP_5740	0.52	-0.2
6,160,866	-		PP_5740	0.52	+0.4
6,160,866	-		PP_5740	0.52	-0.2
6,160,962	+		PP_5740	0.66	+0.3
6,160,962	+		PP_5740	0.66	+0.2
6,160,962	+		PP_5740	0.66	+0.2
6,160,963	-		PP_5740	0.66	+0.8
6,160,963	-		PP_5740	0.66	-2.1
6,160,963	-		PP_5740	0.66	+0.5
6,160,976	+		PP_5740	0.68	-0.4
6,160,977	-		PP_5740	0.68	-1.3
6,161,014	+		PP_5740	0.74	-0.3
6,161,015	-		PP_5740	0.74	-0.5
6,161,015	-		PP_5740	0.74	-0.0
6,161,051	+		PP_5740	0.80	-0.2
6,161,051	+		PP_5740	0.80	-1.1
6,161,052	-		PP_5740	0.80	-0.5
6,161,052	-		PP_5740	0.80	+0.1
6,161,094	-		PP_5740	0.86	-0.8
6,161,137	+				+2.0
6,161,137	+				+0.3
6,161,138	-				-0.1
6,161,196	+				+0.4
6,161,196	+				+0.4
6,161,197	-				+0.7
6,161,197	-				+1.0
6,161,197	-				+0.2
6,161,197	-				-0.4
6,161,197	-				-1.0
6,161,200	+				+0.1
6,161,200	+				-2.0
6,161,200	+				+0.5
6,161,200	+				+0.5
6,161,200	+				+0.7
6,161,200	+				+0.6
6,161,200	+				-0.2
6,161,200	+				-0.2
6,161,201	-				-0.5
6,161,201	-				-0.3
6,161,201	-				-0.1
6,161,201	-				-0.1
6,161,274	+		PP_5741	0.11	-0.6
6,161,274	+		PP_5741	0.11	+0.5
6,161,274	+		PP_5741	0.11	-0.2
6,161,302	+		PP_5741	0.20	-0.4
6,161,302	+		PP_5741	0.20	+0.2
6,161,335	+		PP_5741	0.31	-0.6
6,161,420	-		PP_5741	0.60	+0.7
6,161,420	-		PP_5741	0.60	+0.4
6,161,420	-		PP_5741	0.60	+0.3
6,161,420	-		PP_5741	0.60	+0.3
6,161,422	+		PP_5741	0.61	-0.2
6,161,423	-		PP_5741	0.61	-0.7
6,161,423	-		PP_5741	0.61	-0.2
6,161,423	-		PP_5741	0.61	+0.6
6,161,450	+		PP_5741	0.70	-1.1
6,161,450	+		PP_5741	0.70	+0.8
6,161,451	-		PP_5741	0.70	+0.0
6,161,467	+		PP_5741	0.76	+1.0
6,161,467	+		PP_5741	0.76	+0.0
6,161,467	+		PP_5741	0.76	-0.0
6,161,468	-		PP_5741	0.76	+0.5
6,161,468	-		PP_5741	0.76	-0.0
6,161,468	-		PP_5741	0.76	+0.7
6,161,468	-		PP_5741	0.76	+0.7
6,161,468	-		PP_5741	0.76	-0.8
6,161,469	+		PP_5741	0.76	+0.9
6,161,469	+		PP_5741	0.76	+0.4
6,161,469	+		PP_5741	0.76	-0.4
6,161,469	+		PP_5741	0.76	-0.1
6,161,469	+		PP_5741	0.76	+0.9
6,161,470	-		PP_5741	0.77	+0.3
6,161,470	-		PP_5741	0.77	-0.1
6,161,470	-		PP_5741	0.77	-0.3
6,161,483	+		PP_5741	0.81	-0.3
6,161,518	+				-0.6
6,161,533	+				+0.1
6,161,533	+				-0.7
6,161,534	-				+0.6
6,161,534	-				-0.2
6,161,565	-				-0.5
6,161,565	-				+0.5
6,161,606	+				-0.1
6,161,618	+				-0.1
6,161,654	+		PP_5403	0.20	-0.2
6,161,654	+		PP_5403	0.20	+0.1
6,161,654	+		PP_5403	0.20	+0.4
6,161,654	+		PP_5403	0.20	-0.6
6,161,655	-		PP_5403	0.20	-0.3
6,161,655	-		PP_5403	0.20	-1.0
6,161,762	+		PP_5403	0.54	-0.2
6,161,762	+		PP_5403	0.54	+0.2
6,161,762	+		PP_5403	0.54	-0.5
6,161,762	+		PP_5403	0.54	+0.0
6,161,762	+		PP_5403	0.54	-0.3
6,161,762	+		PP_5403	0.54	+0.9
6,161,762	+		PP_5403	0.54	+0.5
6,161,762	+		PP_5403	0.54	+0.6
6,161,763	-		PP_5403	0.54	-1.3
6,161,763	-		PP_5403	0.54	-0.2
6,161,763	-		PP_5403	0.54	+0.2
6,161,795	-		PP_5403	0.65	+0.2
6,161,816	+		PP_5403	0.71	-0.0
6,161,817	-		PP_5403	0.72	+1.2
6,161,928	+				-0.1
6,161,928	+				-0.0
6,161,928	+				+1.2
6,161,928	+				-1.0
6,161,928	+				+0.9
6,161,928	+				+0.4
6,161,929	-				+0.3
6,161,929	-				+1.0
6,161,929	-				+2.2
6,161,929	-				-0.5
6,161,929	-				+0.0
6,161,929	-				-1.1
6,161,929	-				+1.3
6,161,929	-				-0.7
6,161,929	-				+0.3
6,161,949	-				+1.0
6,161,973	+				-0.6
6,161,987	+				-0.6
6,161,988	-				-0.5
6,161,988	-				+0.6
6,161,993	+				-1.0
6,161,993	+				-0.2
6,161,994	-				-1.1
6,161,994	-				-1.5
6,161,994	-				-0.3
6,161,994	-				+0.3
6,161,994	-				-1.3
6,161,994	-				-0.5
6,161,994	-				-0.8
6,161,994	-				-0.9
6,161,994	-				+1.6
6,161,994	-				+0.6
6,161,994	-				+0.9
6,162,080	+		PP_5404	0.11	+0.2
6,162,081	-		PP_5404	0.11	-0.1
6,162,155	-		PP_5404	0.17	+0.5
6,162,155	-		PP_5404	0.17	+0.3
6,162,177	+		PP_5404	0.19	-0.4
6,162,178	-		PP_5404	0.19	-0.5