Strain Fitness in Pseudomonas putida KT2440 around PP_5371

Experiment: 4-Hydroxyvalerate (C) (40mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyvalerate (C) (40mM)
6,119,801	+		PP_5370	0.28	+0.0
6,119,802	-		PP_5370	0.28	+0.2
6,119,832	+		PP_5370	0.31	+0.9
6,119,832	+		PP_5370	0.31	+0.4
6,119,833	-		PP_5370	0.31	-0.1
6,119,833	-		PP_5370	0.31	+0.7
6,119,833	-		PP_5370	0.31	+0.3
6,119,833	-		PP_5370	0.31	+0.7
6,119,836	+		PP_5370	0.31	-0.3
6,119,836	+		PP_5370	0.31	+0.5
6,119,836	+		PP_5370	0.31	-0.1
6,119,836	+		PP_5370	0.31	-0.4
6,119,836	+		PP_5370	0.31	+0.2
6,119,837	-		PP_5370	0.31	+0.1
6,119,837	-		PP_5370	0.31	+2.2
6,120,006	+		PP_5370	0.44	+0.5
6,120,007	-		PP_5370	0.44	+0.7
6,120,044	+		PP_5370	0.47	+0.0
6,120,044	+		PP_5370	0.47	-0.1
6,120,045	-		PP_5370	0.47	-0.2
6,120,163	+		PP_5370	0.55	-0.2
6,120,176	+		PP_5370	0.56	-0.2
6,120,176	+		PP_5370	0.56	+0.4
6,120,177	-		PP_5370	0.57	-0.4
6,120,177	-		PP_5370	0.57	-0.7
6,120,202	-		PP_5370	0.58	-1.3
6,120,202	-		PP_5370	0.58	-0.6
6,120,216	+		PP_5370	0.59	-0.0
6,120,216	+		PP_5370	0.59	-1.5
6,120,217	-		PP_5370	0.60	-0.4
6,120,232	-		PP_5370	0.61	+0.8
6,120,234	+		PP_5370	0.61	+0.2
6,120,248	+		PP_5370	0.62	+0.0
6,120,248	+		PP_5370	0.62	-0.5
6,120,257	+		PP_5370	0.63	+0.2
6,120,257	+		PP_5370	0.63	-0.6
6,120,257	+		PP_5370	0.63	-0.4
6,120,361	-		PP_5370	0.70	-0.2
6,120,460	+		PP_5370	0.78	+1.0
6,120,460	+		PP_5370	0.78	-0.2
6,120,461	-		PP_5370	0.78	-0.8
6,120,461	-		PP_5370	0.78	+0.6
6,120,461	-		PP_5370	0.78	+0.5
6,120,561	-		PP_5370	0.85	-0.4
6,120,561	-		PP_5370	0.85	+0.8
6,120,645	+				+1.9
6,120,645	+				+0.5
6,120,646	-				-0.2
6,120,646	-				+0.2
6,120,655	+				+0.4
6,120,655	+				+0.8
6,120,655	+				+0.4
6,120,656	-				-1.4
6,120,668	+				-0.4
6,120,705	+				+0.4
6,120,706	-				-0.0
6,120,745	+				-0.1
6,120,746	-				-0.1
6,120,809	-				+0.7
6,121,068	+		PP_5371	0.22	+0.9
6,121,068	+		PP_5371	0.22	+0.5
6,121,069	-		PP_5371	0.22	-0.9
6,121,113	+		PP_5371	0.25	+0.3
6,121,113	+		PP_5371	0.25	-0.5
6,121,113	+		PP_5371	0.25	+0.1
6,121,114	-		PP_5371	0.25	+0.9
6,121,114	-		PP_5371	0.25	+0.7
6,121,114	-		PP_5371	0.25	+0.0
6,121,114	-		PP_5371	0.25	+0.1
6,121,136	+		PP_5371	0.27	+0.0
6,121,136	+		PP_5371	0.27	+0.5
6,121,136	+		PP_5371	0.27	-1.5
6,121,136	+		PP_5371	0.27	+0.4
6,121,136	+		PP_5371	0.27	-0.6
6,121,136	+		PP_5371	0.27	+1.0
6,121,136	+		PP_5371	0.27	+0.3
6,121,136	+		PP_5371	0.27	-0.1
6,121,136	+		PP_5371	0.27	-0.9
6,121,137	-		PP_5371	0.27	+0.4
6,121,137	-		PP_5371	0.27	+0.3
6,121,137	-		PP_5371	0.27	+1.0
6,121,137	-		PP_5371	0.27	-0.2
6,121,425	+		PP_5371	0.48	-0.3
6,121,425	+		PP_5371	0.48	-0.6
6,121,607	+		PP_5371	0.61	+0.6
6,121,624	-		PP_5371	0.62	+0.4
6,121,647	+		PP_5371	0.64	+0.4
6,121,648	-		PP_5371	0.64	+0.5
6,121,648	-		PP_5371	0.64	+0.3
6,121,648	-		PP_5371	0.64	+0.2
6,121,648	-		PP_5371	0.64	-0.3
6,121,694	-		PP_5371	0.67	+0.6
6,121,695	+		PP_5371	0.67	-0.4
6,121,695	+		PP_5371	0.67	-0.6
6,121,695	+		PP_5371	0.67	+0.1
6,121,695	+		PP_5371	0.67	+1.4
6,121,695	+		PP_5371	0.67	-0.2
6,121,695	+		PP_5371	0.67	-0.6
6,121,696	-		PP_5371	0.67	+0.5
6,121,696	-		PP_5371	0.67	+0.2
6,121,699	+		PP_5371	0.67	+0.8
6,121,699	+		PP_5371	0.67	+0.5
6,121,699	+		PP_5371	0.67	-0.3
6,121,700	-		PP_5371	0.68	-1.7
6,121,700	-		PP_5371	0.68	+0.1
6,121,801	-		PP_5371	0.75	+0.9
6,122,112	+				+0.5
6,122,112	+				-0.5
6,122,113	-				+1.6
6,122,150	+				+0.7
6,122,151	-				-1.0
6,122,151	-				-1.5
6,122,151	-				-0.4
6,122,151	-				+0.3
6,122,151	-				+0.1
6,122,176	+				+0.5
6,122,176	+				+1.5
6,122,176	+				+0.4
6,122,177	-				-0.1
6,122,205	+				+0.9
6,122,206	-				-0.3
6,122,206	-				+0.5
6,122,206	-				-0.1
6,122,206	-				-1.5
6,122,211	+				+0.1
6,122,211	+				-1.3
6,122,211	+				-0.1
6,122,212	-				-1.4
6,122,212	-				-0.2
6,122,212	-				-0.2
6,122,289	+				-1.6
6,122,289	+				-0.2
6,122,290	-				-1.3
6,122,290	-				+1.9
6,122,439	-		PP_5372	0.19	+0.3
6,122,439	-		PP_5372	0.19	-0.5
6,122,474	+		PP_5372	0.22	-1.2
6,122,475	-		PP_5372	0.22	-0.4
6,122,475	-		PP_5372	0.22	+0.3
6,122,504	+		PP_5372	0.24	+0.2
6,122,520	+		PP_5372	0.25	+0.3
6,122,520	+		PP_5372	0.25	-0.2
6,122,520	+		PP_5372	0.25	+0.2
6,122,520	+		PP_5372	0.25	+0.7
6,122,521	-		PP_5372	0.25	+0.8
6,122,521	-		PP_5372	0.25	+0.9
6,122,521	-		PP_5372	0.25	+0.4
6,122,521	-		PP_5372	0.25	+0.3
6,122,702	+		PP_5372	0.37	-2.0
6,122,702	+		PP_5372	0.37	+1.2
6,122,703	-		PP_5372	0.37	+0.8
6,122,703	-		PP_5372	0.37	+0.2
6,122,715	+		PP_5372	0.38	+0.3
6,122,716	-		PP_5372	0.38	+0.0
6,122,716	-		PP_5372	0.38	+0.8
6,122,716	-		PP_5372	0.38	+0.7
6,122,720	-		PP_5372	0.39	+1.2
6,122,720	-		PP_5372	0.39	-0.5
6,122,729	+		PP_5372	0.39	-1.3
6,122,729	+		PP_5372	0.39	+0.0
6,122,729	+		PP_5372	0.39	+0.5
6,122,964	+		PP_5372	0.55	+0.1
6,122,964	+		PP_5372	0.55	-0.6
6,122,965	-		PP_5372	0.56	-1.8
6,123,140	+		PP_5372	0.68	+2.2