Strain Fitness in Pseudomonas putida KT2440 around PP_4740

Experiment: 4-Hydroxyvalerate (C) (40mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5710 and PP_4740 are separated by 386 nucleotidesPP_4740 and PP_4741 are separated by 100 nucleotides PP_5710: PP_5710 - exported protein of unknown function, at 5,392,091 to 5,392,672 _5710 PP_4740: PP_4740 - Type I restriction enzyme EcoAI R protein, at 5,393,059 to 5,395,422 _4740 PP_4741: PP_4741 - Type I restriction enzyme EcoEI M protein, at 5,395,523 to 5,396,992 _4741 Position (kb) 5393 5394 5395 5396Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5392.085 kb on + strandat 5392.120 kb on - strandat 5392.135 kb on + strandat 5392.151 kb on + strand, within PP_5710at 5392.154 kb on + strand, within PP_5710at 5392.156 kb on + strand, within PP_5710at 5392.157 kb on - strand, within PP_5710at 5392.157 kb on - strand, within PP_5710at 5392.234 kb on + strand, within PP_5710at 5392.238 kb on + strand, within PP_5710at 5392.238 kb on + strand, within PP_5710at 5392.239 kb on - strand, within PP_5710at 5392.239 kb on - strand, within PP_5710at 5392.310 kb on + strand, within PP_5710at 5392.311 kb on - strand, within PP_5710at 5392.311 kb on - strand, within PP_5710at 5392.311 kb on - strand, within PP_5710at 5392.317 kb on - strand, within PP_5710at 5392.322 kb on + strand, within PP_5710at 5392.322 kb on + strand, within PP_5710at 5392.323 kb on - strand, within PP_5710at 5392.361 kb on - strand, within PP_5710at 5392.368 kb on - strand, within PP_5710at 5392.368 kb on - strand, within PP_5710at 5392.488 kb on - strand, within PP_5710at 5392.545 kb on - strand, within PP_5710at 5392.576 kb on + strand, within PP_5710at 5392.577 kb on - strand, within PP_5710at 5392.605 kb on - strand, within PP_5710at 5392.660 kb on + strandat 5392.661 kb on - strandat 5392.666 kb on + strandat 5392.667 kb on - strandat 5392.667 kb on - strandat 5392.667 kb on - strandat 5392.721 kb on + strandat 5392.732 kb on + strandat 5392.732 kb on + strandat 5392.733 kb on - strandat 5392.792 kb on + strandat 5392.795 kb on + strandat 5392.795 kb on + strandat 5392.796 kb on - strandat 5392.796 kb on - strandat 5392.796 kb on - strandat 5392.809 kb on + strandat 5392.809 kb on + strandat 5392.810 kb on - strandat 5392.878 kb on + strandat 5392.879 kb on - strandat 5392.888 kb on + strandat 5392.889 kb on - strandat 5392.889 kb on - strandat 5392.889 kb on - strandat 5392.918 kb on + strandat 5392.919 kb on - strandat 5392.954 kb on + strandat 5392.954 kb on + strandat 5392.954 kb on + strandat 5392.954 kb on + strandat 5392.955 kb on - strandat 5392.955 kb on - strandat 5393.011 kb on + strandat 5393.011 kb on + strandat 5393.012 kb on - strandat 5393.012 kb on - strandat 5393.012 kb on - strandat 5393.012 kb on - strandat 5393.016 kb on - strandat 5393.016 kb on - strandat 5393.016 kb on - strandat 5393.042 kb on + strandat 5393.051 kb on - strandat 5393.101 kb on + strandat 5393.101 kb on + strandat 5393.101 kb on + strandat 5393.101 kb on + strandat 5393.102 kb on - strandat 5393.102 kb on - strandat 5393.102 kb on - strandat 5393.184 kb on + strandat 5393.185 kb on - strandat 5393.185 kb on - strandat 5393.242 kb on + strandat 5393.243 kb on - strandat 5393.243 kb on - strandat 5393.262 kb on + strandat 5393.286 kb on + strandat 5393.329 kb on + strand, within PP_4740at 5393.448 kb on + strand, within PP_4740at 5393.449 kb on - strandat 5393.516 kb on + strand, within PP_4740at 5393.516 kb on + strand, within PP_4740at 5393.516 kb on + strand, within PP_4740at 5393.517 kb on - strand, within PP_4740at 5393.517 kb on - strand, within PP_4740at 5393.527 kb on + strand, within PP_4740at 5393.528 kb on - strand, within PP_4740at 5393.531 kb on - strand, within PP_4740at 5393.551 kb on - strand, within PP_4740at 5393.560 kb on + strand, within PP_4740at 5393.561 kb on - strand, within PP_4740at 5393.630 kb on + strand, within PP_4740at 5393.631 kb on - strand, within PP_4740at 5393.767 kb on - strand, within PP_4740at 5393.810 kb on + strand, within PP_4740at 5393.811 kb on - strand, within PP_4740at 5393.811 kb on - strand, within PP_4740at 5393.822 kb on - strand, within PP_4740at 5393.842 kb on + strand, within PP_4740at 5393.842 kb on + strand, within PP_4740at 5393.843 kb on - strand, within PP_4740at 5393.843 kb on - strand, within PP_4740at 5393.843 kb on - strand, within PP_4740at 5393.881 kb on + strand, within PP_4740at 5393.882 kb on - strand, within PP_4740at 5393.981 kb on - strand, within PP_4740at 5394.052 kb on + strand, within PP_4740at 5394.052 kb on + strand, within PP_4740at 5394.053 kb on - strand, within PP_4740at 5394.053 kb on - strand, within PP_4740at 5394.070 kb on + strand, within PP_4740at 5394.070 kb on + strand, within PP_4740at 5394.071 kb on - strand, within PP_4740at 5394.071 kb on - strand, within PP_4740at 5394.076 kb on + strand, within PP_4740at 5394.076 kb on + strand, within PP_4740at 5394.076 kb on + strand, within PP_4740at 5394.076 kb on + strand, within PP_4740at 5394.076 kb on + strand, within PP_4740at 5394.076 kb on + strand, within PP_4740at 5394.076 kb on + strand, within PP_4740at 5394.076 kb on + strand, within PP_4740at 5394.077 kb on - strand, within PP_4740at 5394.077 kb on - strand, within PP_4740at 5394.077 kb on - strand, within PP_4740at 5394.120 kb on + strand, within PP_4740at 5394.120 kb on + strand, within PP_4740at 5394.120 kb on + strand, within PP_4740at 5394.121 kb on - strand, within PP_4740at 5394.121 kb on - strand, within PP_4740at 5394.152 kb on + strand, within PP_4740at 5394.152 kb on + strand, within PP_4740at 5394.152 kb on + strand, within PP_4740at 5394.153 kb on - strand, within PP_4740at 5394.153 kb on - strand, within PP_4740at 5394.153 kb on - strand, within PP_4740at 5394.153 kb on - strand, within PP_4740at 5394.153 kb on - strand, within PP_4740at 5394.217 kb on + strand, within PP_4740at 5394.218 kb on - strand, within PP_4740at 5394.218 kb on - strand, within PP_4740at 5394.218 kb on - strand, within PP_4740at 5394.218 kb on - strand, within PP_4740at 5394.218 kb on - strand, within PP_4740at 5394.361 kb on - strand, within PP_4740at 5394.361 kb on - strand, within PP_4740at 5394.415 kb on + strand, within PP_4740at 5394.415 kb on + strand, within PP_4740at 5394.415 kb on + strand, within PP_4740at 5394.416 kb on - strand, within PP_4740at 5394.416 kb on - strand, within PP_4740at 5394.416 kb on - strand, within PP_4740at 5394.416 kb on - strand, within PP_4740at 5394.644 kb on - strand, within PP_4740at 5394.644 kb on - strand, within PP_4740at 5394.658 kb on - strand, within PP_4740at 5394.658 kb on - strand, within PP_4740at 5394.724 kb on + strand, within PP_4740at 5394.724 kb on + strand, within PP_4740at 5394.724 kb on + strand, within PP_4740at 5394.725 kb on - strand, within PP_4740at 5394.746 kb on + strand, within PP_4740at 5394.746 kb on + strand, within PP_4740at 5394.747 kb on - strand, within PP_4740at 5394.747 kb on - strand, within PP_4740at 5394.768 kb on - strand, within PP_4740at 5394.859 kb on + strand, within PP_4740at 5394.859 kb on + strand, within PP_4740at 5394.860 kb on - strand, within PP_4740at 5394.883 kb on + strand, within PP_4740at 5394.907 kb on + strand, within PP_4740at 5394.910 kb on + strand, within PP_4740at 5394.911 kb on - strand, within PP_4740at 5394.911 kb on - strand, within PP_4740at 5394.952 kb on + strand, within PP_4740at 5394.953 kb on - strand, within PP_4740at 5394.953 kb on - strand, within PP_4740at 5394.953 kb on - strand, within PP_4740at 5394.953 kb on - strand, within PP_4740at 5394.953 kb on - strand, within PP_4740at 5394.960 kb on + strand, within PP_4740at 5394.960 kb on + strand, within PP_4740at 5395.200 kb on + strandat 5395.201 kb on - strandat 5395.204 kb on + strandat 5395.204 kb on + strandat 5395.205 kb on - strandat 5395.217 kb on - strandat 5395.217 kb on - strandat 5395.261 kb on + strandat 5395.261 kb on + strandat 5395.320 kb on + strandat 5395.350 kb on + strandat 5395.375 kb on + strandat 5395.386 kb on + strandat 5395.386 kb on + strandat 5395.386 kb on + strandat 5395.387 kb on - strandat 5395.412 kb on - strandat 5395.420 kb on + strandat 5395.421 kb on - strandat 5395.430 kb on + strandat 5395.431 kb on - strandat 5395.467 kb on + strandat 5395.467 kb on + strandat 5395.468 kb on - strandat 5395.468 kb on - strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.485 kb on - strandat 5395.485 kb on - strandat 5395.485 kb on - strandat 5395.522 kb on + strandat 5395.679 kb on + strand, within PP_4741at 5395.679 kb on + strand, within PP_4741at 5395.679 kb on + strand, within PP_4741at 5395.679 kb on + strand, within PP_4741at 5395.679 kb on + strand, within PP_4741at 5395.679 kb on + strand, within PP_4741at 5395.680 kb on - strand, within PP_4741at 5395.680 kb on - strand, within PP_4741at 5395.680 kb on - strand, within PP_4741at 5395.766 kb on - strand, within PP_4741at 5395.766 kb on - strand, within PP_4741at 5395.808 kb on + strand, within PP_4741at 5395.809 kb on - strand, within PP_4741at 5395.809 kb on - strand, within PP_4741at 5395.859 kb on + strand, within PP_4741at 5395.859 kb on + strand, within PP_4741at 5395.859 kb on + strand, within PP_4741at 5395.860 kb on - strand, within PP_4741at 5395.865 kb on + strand, within PP_4741at 5395.865 kb on + strand, within PP_4741at 5395.866 kb on - strand, within PP_4741at 5395.965 kb on - strand, within PP_4741at 5395.965 kb on - strand, within PP_4741at 5396.015 kb on + strand, within PP_4741at 5396.015 kb on + strand, within PP_4741at 5396.015 kb on + strand, within PP_4741at 5396.016 kb on - strand, within PP_4741at 5396.016 kb on - strand, within PP_4741at 5396.016 kb on - strand, within PP_4741at 5396.144 kb on + strand, within PP_4741at 5396.145 kb on - strand, within PP_4741at 5396.145 kb on - strand, within PP_4741at 5396.145 kb on - strand, within PP_4741at 5396.149 kb on - strand, within PP_4741at 5396.149 kb on - strand, within PP_4741at 5396.149 kb on - strand, within PP_4741at 5396.335 kb on + strand, within PP_4741at 5396.336 kb on - strand, within PP_4741at 5396.336 kb on - strand, within PP_4741at 5396.336 kb on - strand, within PP_4741

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxyvalerate (C) (40mM)
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5,392,085 + +0.2
5,392,120 - +0.6
5,392,135 + -0.1
5,392,151 + PP_5710 0.10 +0.2
5,392,154 + PP_5710 0.11 +0.2
5,392,156 + PP_5710 0.11 +0.5
5,392,157 - PP_5710 0.11 +0.5
5,392,157 - PP_5710 0.11 +1.0
5,392,234 + PP_5710 0.25 -0.3
5,392,238 + PP_5710 0.25 +1.0
5,392,238 + PP_5710 0.25 -0.2
5,392,239 - PP_5710 0.25 -0.2
5,392,239 - PP_5710 0.25 +1.5
5,392,310 + PP_5710 0.38 +0.9
5,392,311 - PP_5710 0.38 -0.5
5,392,311 - PP_5710 0.38 -0.8
5,392,311 - PP_5710 0.38 +1.1
5,392,317 - PP_5710 0.39 -0.4
5,392,322 + PP_5710 0.40 +0.5
5,392,322 + PP_5710 0.40 +0.8
5,392,323 - PP_5710 0.40 +1.4
5,392,361 - PP_5710 0.46 +0.3
5,392,368 - PP_5710 0.48 -0.6
5,392,368 - PP_5710 0.48 -0.9
5,392,488 - PP_5710 0.68 +0.2
5,392,545 - PP_5710 0.78 +0.4
5,392,576 + PP_5710 0.83 -0.1
5,392,577 - PP_5710 0.84 +1.5
5,392,605 - PP_5710 0.88 +0.0
5,392,660 + +0.2
5,392,661 - +0.1
5,392,666 + -1.0
5,392,667 - -0.5
5,392,667 - -0.8
5,392,667 - +0.3
5,392,721 + -1.0
5,392,732 + -0.8
5,392,732 + +0.0
5,392,733 - -0.3
5,392,792 + +0.0
5,392,795 + -0.0
5,392,795 + -1.3
5,392,796 - -0.0
5,392,796 - +0.7
5,392,796 - +0.1
5,392,809 + +0.5
5,392,809 + -0.4
5,392,810 - -0.3
5,392,878 + +0.7
5,392,879 - +0.7
5,392,888 + -0.4
5,392,889 - +0.9
5,392,889 - +1.2
5,392,889 - +0.8
5,392,918 + -0.6
5,392,919 - -0.5
5,392,954 + -0.8
5,392,954 + +0.4
5,392,954 + +0.1
5,392,954 + -0.4
5,392,955 - -0.8
5,392,955 - +0.7
5,393,011 + -0.5
5,393,011 + +1.1
5,393,012 - -0.5
5,393,012 - -0.0
5,393,012 - +0.0
5,393,012 - +0.3
5,393,016 - -0.8
5,393,016 - +0.7
5,393,016 - -1.0
5,393,042 + +0.8
5,393,051 - -1.5
5,393,101 + -1.2
5,393,101 + +0.5
5,393,101 + +0.7
5,393,101 + +0.4
5,393,102 - -0.1
5,393,102 - +1.3
5,393,102 - -0.8
5,393,184 + +0.7
5,393,185 - +0.4
5,393,185 - -0.3
5,393,242 + -0.3
5,393,243 - +1.3
5,393,243 - +0.4
5,393,262 + -0.6
5,393,286 + +0.2
5,393,329 + PP_4740 0.11 +0.1
5,393,448 + PP_4740 0.16 +0.8
5,393,449 - +1.2
5,393,516 + PP_4740 0.19 -0.1
5,393,516 + PP_4740 0.19 +0.5
5,393,516 + PP_4740 0.19 +0.7
5,393,517 - PP_4740 0.19 +0.4
5,393,517 - PP_4740 0.19 -0.6
5,393,527 + PP_4740 0.20 -1.3
5,393,528 - PP_4740 0.20 +0.2
5,393,531 - PP_4740 0.20 +0.7
5,393,551 - PP_4740 0.21 +1.4
5,393,560 + PP_4740 0.21 -0.4
5,393,561 - PP_4740 0.21 +0.4
5,393,630 + PP_4740 0.24 +0.2
5,393,631 - PP_4740 0.24 +0.4
5,393,767 - PP_4740 0.30 -0.0
5,393,810 + PP_4740 0.32 +0.7
5,393,811 - PP_4740 0.32 +0.7
5,393,811 - PP_4740 0.32 -0.3
5,393,822 - PP_4740 0.32 +0.8
5,393,842 + PP_4740 0.33 +0.6
5,393,842 + PP_4740 0.33 +0.2
5,393,843 - PP_4740 0.33 +1.2
5,393,843 - PP_4740 0.33 +0.5
5,393,843 - PP_4740 0.33 -0.3
5,393,881 + PP_4740 0.35 +1.2
5,393,882 - PP_4740 0.35 -0.1
5,393,981 - PP_4740 0.39 +0.6
5,394,052 + PP_4740 0.42 +0.4
5,394,052 + PP_4740 0.42 +0.1
5,394,053 - PP_4740 0.42 -1.6
5,394,053 - PP_4740 0.42 -0.5
5,394,070 + PP_4740 0.43 +1.9
5,394,070 + PP_4740 0.43 +1.5
5,394,071 - PP_4740 0.43 -1.0
5,394,071 - PP_4740 0.43 -0.0
5,394,076 + PP_4740 0.43 +0.5
5,394,076 + PP_4740 0.43 -0.2
5,394,076 + PP_4740 0.43 -0.6
5,394,076 + PP_4740 0.43 +0.1
5,394,076 + PP_4740 0.43 +0.8
5,394,076 + PP_4740 0.43 -0.5
5,394,076 + PP_4740 0.43 +0.7
5,394,076 + PP_4740 0.43 -0.3
5,394,077 - PP_4740 0.43 -0.2
5,394,077 - PP_4740 0.43 -0.5
5,394,077 - PP_4740 0.43 +0.2
5,394,120 + PP_4740 0.45 +0.6
5,394,120 + PP_4740 0.45 +0.6
5,394,120 + PP_4740 0.45 -0.4
5,394,121 - PP_4740 0.45 +0.3
5,394,121 - PP_4740 0.45 +0.7
5,394,152 + PP_4740 0.46 +0.3
5,394,152 + PP_4740 0.46 +0.2
5,394,152 + PP_4740 0.46 -0.3
5,394,153 - PP_4740 0.46 +0.1
5,394,153 - PP_4740 0.46 +0.2
5,394,153 - PP_4740 0.46 -0.0
5,394,153 - PP_4740 0.46 +0.7
5,394,153 - PP_4740 0.46 +0.7
5,394,217 + PP_4740 0.49 +1.1
5,394,218 - PP_4740 0.49 +0.5
5,394,218 - PP_4740 0.49 +0.5
5,394,218 - PP_4740 0.49 +0.4
5,394,218 - PP_4740 0.49 -0.8
5,394,218 - PP_4740 0.49 +0.2
5,394,361 - PP_4740 0.55 +1.1
5,394,361 - PP_4740 0.55 -0.8
5,394,415 + PP_4740 0.57 -0.5
5,394,415 + PP_4740 0.57 +0.6
5,394,415 + PP_4740 0.57 -0.2
5,394,416 - PP_4740 0.57 -0.8
5,394,416 - PP_4740 0.57 -0.0
5,394,416 - PP_4740 0.57 +1.1
5,394,416 - PP_4740 0.57 +0.0
5,394,644 - PP_4740 0.67 +0.0
5,394,644 - PP_4740 0.67 +0.8
5,394,658 - PP_4740 0.68 +0.3
5,394,658 - PP_4740 0.68 +1.7
5,394,724 + PP_4740 0.70 +0.4
5,394,724 + PP_4740 0.70 -0.1
5,394,724 + PP_4740 0.70 +0.4
5,394,725 - PP_4740 0.70 +1.2
5,394,746 + PP_4740 0.71 +0.5
5,394,746 + PP_4740 0.71 -0.0
5,394,747 - PP_4740 0.71 -0.2
5,394,747 - PP_4740 0.71 +0.8
5,394,768 - PP_4740 0.72 -0.6
5,394,859 + PP_4740 0.76 +0.1
5,394,859 + PP_4740 0.76 +1.8
5,394,860 - PP_4740 0.76 +1.3
5,394,883 + PP_4740 0.77 +0.3
5,394,907 + PP_4740 0.78 +1.0
5,394,910 + PP_4740 0.78 +0.2
5,394,911 - PP_4740 0.78 -2.3
5,394,911 - PP_4740 0.78 +0.2
5,394,952 + PP_4740 0.80 -0.6
5,394,953 - PP_4740 0.80 -1.2
5,394,953 - PP_4740 0.80 +0.4
5,394,953 - PP_4740 0.80 +0.0
5,394,953 - PP_4740 0.80 +0.5
5,394,953 - PP_4740 0.80 -0.1
5,394,960 + PP_4740 0.80 +0.1
5,394,960 + PP_4740 0.80 +1.4
5,395,200 + -0.7
5,395,201 - +0.7
5,395,204 + +0.8
5,395,204 + +1.6
5,395,205 - -0.6
5,395,217 - -0.4
5,395,217 - +0.9
5,395,261 + +0.5
5,395,261 + -0.6
5,395,320 + -0.6
5,395,350 + +1.0
5,395,375 + +0.5
5,395,386 + +0.1
5,395,386 + -0.3
5,395,386 + +1.3
5,395,387 - +1.5
5,395,412 - +3.2
5,395,420 + +1.2
5,395,421 - +0.7
5,395,430 + +0.8
5,395,431 - +0.6
5,395,467 + +1.0
5,395,467 + +0.4
5,395,468 - -0.1
5,395,468 - -0.4
5,395,484 + -0.3
5,395,484 + +0.1
5,395,484 + -0.3
5,395,484 + +0.7
5,395,484 + -0.3
5,395,484 + +0.1
5,395,484 + +1.4
5,395,484 + -0.2
5,395,485 - +0.7
5,395,485 - +0.8
5,395,485 - +0.7
5,395,522 + +0.8
5,395,679 + PP_4741 0.11 +1.8
5,395,679 + PP_4741 0.11 +0.8
5,395,679 + PP_4741 0.11 +1.2
5,395,679 + PP_4741 0.11 -0.8
5,395,679 + PP_4741 0.11 -0.0
5,395,679 + PP_4741 0.11 -1.0
5,395,680 - PP_4741 0.11 +0.2
5,395,680 - PP_4741 0.11 +0.6
5,395,680 - PP_4741 0.11 +0.4
5,395,766 - PP_4741 0.17 +0.2
5,395,766 - PP_4741 0.17 +0.5
5,395,808 + PP_4741 0.19 +0.1
5,395,809 - PP_4741 0.19 +1.1
5,395,809 - PP_4741 0.19 +1.4
5,395,859 + PP_4741 0.23 -0.5
5,395,859 + PP_4741 0.23 -0.2
5,395,859 + PP_4741 0.23 +0.6
5,395,860 - PP_4741 0.23 +0.7
5,395,865 + PP_4741 0.23 -0.2
5,395,865 + PP_4741 0.23 +0.6
5,395,866 - PP_4741 0.23 +0.6
5,395,965 - PP_4741 0.30 +0.5
5,395,965 - PP_4741 0.30 +0.1
5,396,015 + PP_4741 0.33 +1.0
5,396,015 + PP_4741 0.33 -0.1
5,396,015 + PP_4741 0.33 -0.1
5,396,016 - PP_4741 0.34 +0.4
5,396,016 - PP_4741 0.34 +0.5
5,396,016 - PP_4741 0.34 +0.4
5,396,144 + PP_4741 0.42 +0.5
5,396,145 - PP_4741 0.42 +0.4
5,396,145 - PP_4741 0.42 -0.6
5,396,145 - PP_4741 0.42 +0.2
5,396,149 - PP_4741 0.43 +0.3
5,396,149 - PP_4741 0.43 -0.8
5,396,149 - PP_4741 0.43 +0.7
5,396,335 + PP_4741 0.55 +0.3
5,396,336 - PP_4741 0.55 -0.8
5,396,336 - PP_4741 0.55 +1.0
5,396,336 - PP_4741 0.55 -0.4

Or see this region's nucleotide sequence