Strain Fitness in Pseudomonas putida KT2440 around PP_4572

Experiment: 4-Hydroxyvalerate (C) (40mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4571 and PP_4572 are separated by 132 nucleotidesPP_4572 and PP_4573 are separated by 201 nucleotides PP_4571: PP_4571 - cysteine synthase A, at 5,190,439 to 5,191,413 _4571 PP_4572: PP_4572 - conserved exported protein of unknown function, at 5,191,546 to 5,192,619 _4572 PP_4573: PP_4573 - ATPase, AAA family, at 5,192,821 to 5,193,666 _4573 Position (kb) 5191 5192 5193Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5190.597 kb on + strand, within PP_4571at 5190.834 kb on + strand, within PP_4571at 5190.835 kb on - strand, within PP_4571at 5190.835 kb on - strand, within PP_4571at 5190.835 kb on - strand, within PP_4571at 5190.845 kb on + strand, within PP_4571at 5190.846 kb on - strand, within PP_4571at 5190.995 kb on + strand, within PP_4571at 5190.996 kb on - strand, within PP_4571at 5190.996 kb on - strand, within PP_4571at 5190.996 kb on - strand, within PP_4571at 5190.996 kb on - strand, within PP_4571at 5190.996 kb on - strand, within PP_4571at 5191.072 kb on + strand, within PP_4571at 5191.072 kb on + strand, within PP_4571at 5191.073 kb on - strand, within PP_4571at 5191.151 kb on + strand, within PP_4571at 5191.405 kb on - strandat 5191.405 kb on - strandat 5191.458 kb on + strandat 5191.480 kb on - strandat 5191.627 kb on + strandat 5191.628 kb on - strandat 5191.643 kb on - strandat 5191.688 kb on + strand, within PP_4572at 5191.689 kb on - strand, within PP_4572at 5191.724 kb on - strand, within PP_4572at 5191.772 kb on + strand, within PP_4572at 5191.829 kb on - strand, within PP_4572at 5191.893 kb on + strand, within PP_4572at 5191.894 kb on - strand, within PP_4572at 5191.924 kb on - strand, within PP_4572at 5191.924 kb on - strand, within PP_4572at 5192.150 kb on + strand, within PP_4572at 5192.151 kb on - strand, within PP_4572at 5192.337 kb on + strand, within PP_4572at 5192.337 kb on + strand, within PP_4572at 5192.337 kb on + strand, within PP_4572at 5192.338 kb on - strand, within PP_4572at 5192.338 kb on - strand, within PP_4572at 5192.338 kb on - strand, within PP_4572at 5192.339 kb on + strand, within PP_4572at 5192.340 kb on - strand, within PP_4572at 5192.340 kb on - strand, within PP_4572at 5192.340 kb on - strand, within PP_4572at 5192.523 kb on + strandat 5192.523 kb on + strandat 5192.524 kb on - strandat 5192.524 kb on - strandat 5192.524 kb on - strandat 5192.590 kb on + strandat 5192.590 kb on + strandat 5192.590 kb on + strandat 5192.590 kb on + strandat 5192.590 kb on + strandat 5192.650 kb on + strandat 5192.686 kb on + strandat 5192.687 kb on - strandat 5192.688 kb on + strandat 5192.741 kb on - strandat 5192.760 kb on + strandat 5192.760 kb on + strandat 5192.760 kb on + strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.763 kb on + strandat 5192.763 kb on + strandat 5192.764 kb on - strandat 5192.764 kb on - strandat 5192.764 kb on - strandat 5192.764 kb on - strandat 5193.028 kb on + strand, within PP_4573at 5193.029 kb on - strand, within PP_4573at 5193.034 kb on + strand, within PP_4573at 5193.100 kb on + strand, within PP_4573at 5193.101 kb on - strand, within PP_4573at 5193.101 kb on - strand, within PP_4573at 5193.232 kb on + strand, within PP_4573at 5193.232 kb on + strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.288 kb on + strand, within PP_4573at 5193.288 kb on + strand, within PP_4573at 5193.289 kb on - strand, within PP_4573at 5193.346 kb on + strand, within PP_4573at 5193.346 kb on + strand, within PP_4573at 5193.346 kb on + strand, within PP_4573at 5193.346 kb on + strand, within PP_4573at 5193.347 kb on - strand, within PP_4573at 5193.370 kb on - strand, within PP_4573at 5193.617 kb on + strandat 5193.617 kb on + strandat 5193.617 kb on + strandat 5193.617 kb on + strandat 5193.618 kb on - strandat 5193.618 kb on - strandat 5193.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxyvalerate (C) (40mM)
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5,190,597 + PP_4571 0.16 -2.3
5,190,834 + PP_4571 0.41 -2.9
5,190,835 - PP_4571 0.41 -2.8
5,190,835 - PP_4571 0.41 -0.1
5,190,835 - PP_4571 0.41 -4.2
5,190,845 + PP_4571 0.42 -3.8
5,190,846 - PP_4571 0.42 -1.6
5,190,995 + PP_4571 0.57 -3.3
5,190,996 - PP_4571 0.57 -2.6
5,190,996 - PP_4571 0.57 -2.1
5,190,996 - PP_4571 0.57 -2.3
5,190,996 - PP_4571 0.57 -3.5
5,190,996 - PP_4571 0.57 -1.1
5,191,072 + PP_4571 0.65 -1.1
5,191,072 + PP_4571 0.65 -2.8
5,191,073 - PP_4571 0.65 -1.0
5,191,151 + PP_4571 0.73 -3.2
5,191,405 - -2.3
5,191,405 - -1.4
5,191,458 + -1.3
5,191,480 - +0.7
5,191,627 + +0.3
5,191,628 - +0.5
5,191,643 - +2.2
5,191,688 + PP_4572 0.13 -0.3
5,191,689 - PP_4572 0.13 +0.6
5,191,724 - PP_4572 0.17 -0.8
5,191,772 + PP_4572 0.21 +0.2
5,191,829 - PP_4572 0.26 +0.0
5,191,893 + PP_4572 0.32 +0.4
5,191,894 - PP_4572 0.32 +1.1
5,191,924 - PP_4572 0.35 +0.3
5,191,924 - PP_4572 0.35 +0.0
5,192,150 + PP_4572 0.56 -0.2
5,192,151 - PP_4572 0.56 +0.7
5,192,337 + PP_4572 0.74 -0.0
5,192,337 + PP_4572 0.74 -0.0
5,192,337 + PP_4572 0.74 +0.2
5,192,338 - PP_4572 0.74 +0.8
5,192,338 - PP_4572 0.74 +0.2
5,192,338 - PP_4572 0.74 -0.1
5,192,339 + PP_4572 0.74 -0.3
5,192,340 - PP_4572 0.74 +0.4
5,192,340 - PP_4572 0.74 -0.8
5,192,340 - PP_4572 0.74 +0.2
5,192,523 + -0.0
5,192,523 + -0.4
5,192,524 - +1.9
5,192,524 - +0.4
5,192,524 - -0.4
5,192,590 + -0.5
5,192,590 + +0.3
5,192,590 + -0.4
5,192,590 + -0.7
5,192,590 + -1.0
5,192,650 + +0.8
5,192,686 + -1.8
5,192,687 - +0.6
5,192,688 + +1.1
5,192,741 - -0.6
5,192,760 + +0.1
5,192,760 + -0.2
5,192,760 + +0.7
5,192,761 - +0.1
5,192,761 - +0.5
5,192,761 - -0.3
5,192,761 - -0.1
5,192,761 - -0.4
5,192,761 - -0.2
5,192,763 + +1.7
5,192,763 + +0.7
5,192,764 - -0.4
5,192,764 - -0.5
5,192,764 - -1.3
5,192,764 - +0.4
5,193,028 + PP_4573 0.24 +0.1
5,193,029 - PP_4573 0.25 -0.3
5,193,034 + PP_4573 0.25 +0.6
5,193,100 + PP_4573 0.33 +1.0
5,193,101 - PP_4573 0.33 -0.5
5,193,101 - PP_4573 0.33 -0.3
5,193,232 + PP_4573 0.49 +0.2
5,193,232 + PP_4573 0.49 -1.4
5,193,233 - PP_4573 0.49 +0.4
5,193,233 - PP_4573 0.49 -0.4
5,193,233 - PP_4573 0.49 -0.5
5,193,233 - PP_4573 0.49 +0.3
5,193,233 - PP_4573 0.49 +0.5
5,193,233 - PP_4573 0.49 -0.1
5,193,288 + PP_4573 0.55 -0.3
5,193,288 + PP_4573 0.55 +0.0
5,193,289 - PP_4573 0.55 -0.9
5,193,346 + PP_4573 0.62 -0.2
5,193,346 + PP_4573 0.62 +0.3
5,193,346 + PP_4573 0.62 -0.3
5,193,346 + PP_4573 0.62 -0.5
5,193,347 - PP_4573 0.62 +0.1
5,193,370 - PP_4573 0.65 +1.2
5,193,617 + +0.3
5,193,617 + +0.6
5,193,617 + -0.0
5,193,617 + -0.7
5,193,618 - +2.2
5,193,618 - +0.4
5,193,618 - -0.2

Or see this region's nucleotide sequence