Experiment: 4-Hydroxyvalerate (C) (40mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0190 and PP_0191 are separated by 231 nucleotides PP_0191 and PP_0192 are separated by 8 nucleotides PP_0192 and PP_0194 are separated by 154 nucleotides
PP_0190: PP_0190 - putative disulfide bond formation protein B, at 242,291 to 242,797
_0190
PP_0191: PP_0191 - Transcriptional regulatory protein AlgQ, at 243,029 to 243,499
_0191
PP_0192: PP_0192 - putative FKBP-type 25 kDa peptidyl-prolyl cis-trans isomerase, at 243,508 to 244,170
_0192
PP_0194: PP_0194 - Transcriptional regulatory protein AlgP, at 244,325 to 245,314
_0194
Position (kb) 243
244
245 Strain fitness (log2 ratio) -1
0
1
2
3 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.768 kb on + strand at 242.840 kb on - strand at 242.840 kb on - strand at 242.840 kb on - strand at 242.847 kb on + strand at 242.850 kb on + strand at 242.860 kb on + strand at 242.880 kb on + strand at 242.880 kb on + strand at 242.907 kb on + strand at 242.908 kb on - strand at 242.924 kb on + strand at 243.006 kb on + strand at 243.037 kb on + strand at 243.038 kb on - strand at 243.203 kb on + strand, within PP_0191 at 243.203 kb on + strand, within PP_0191 at 243.319 kb on + strand, within PP_0191 at 243.319 kb on + strand, within PP_0191 at 243.554 kb on + strand at 243.554 kb on + strand at 243.554 kb on + strand at 243.555 kb on - strand at 243.590 kb on + strand, within PP_0192 at 243.590 kb on + strand, within PP_0192 at 243.610 kb on + strand, within PP_0192 at 243.611 kb on - strand, within PP_0192 at 243.743 kb on + strand, within PP_0192 at 243.744 kb on - strand, within PP_0192 at 243.744 kb on - strand, within PP_0192 at 243.744 kb on - strand, within PP_0192 at 243.807 kb on - strand, within PP_0192 at 243.824 kb on - strand, within PP_0192 at 243.824 kb on - strand, within PP_0192 at 243.839 kb on + strand, within PP_0192 at 243.839 kb on + strand, within PP_0192 at 243.856 kb on - strand, within PP_0192 at 243.978 kb on - strand, within PP_0192 at 244.067 kb on + strand, within PP_0192 at 244.068 kb on - strand, within PP_0192 at 244.136 kb on + strand at 244.137 kb on - strand at 244.162 kb on + strand at 244.187 kb on + strand at 244.187 kb on + strand at 244.188 kb on - strand at 244.188 kb on - strand at 244.188 kb on - strand at 244.210 kb on + strand at 244.242 kb on - strand at 244.249 kb on - strand at 244.287 kb on + strand at 244.287 kb on + strand at 244.287 kb on + strand at 244.287 kb on + strand at 244.288 kb on - strand at 244.288 kb on - strand at 244.288 kb on - strand at 244.288 kb on - strand at 244.288 kb on - strand at 244.290 kb on + strand at 244.290 kb on + strand at 244.290 kb on + strand at 244.290 kb on + strand at 244.291 kb on - strand at 244.291 kb on - strand at 244.319 kb on + strand at 244.347 kb on + strand at 244.351 kb on + strand at 244.352 kb on - strand at 244.359 kb on + strand at 244.360 kb on - strand at 244.531 kb on + strand, within PP_0194 at 244.532 kb on - strand at 244.625 kb on + strand, within PP_0194 at 244.625 kb on + strand, within PP_0194 at 244.681 kb on - strand, within PP_0194 at 244.684 kb on + strand, within PP_0194 at 244.684 kb on + strand, within PP_0194 at 244.684 kb on + strand, within PP_0194 at 244.684 kb on + strand, within PP_0194 at 244.685 kb on - strand, within PP_0194 at 245.053 kb on + strand, within PP_0194
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxyvalerate (C) (40mM) remove 242,587 - PP_0190 0.58 -0.1 242,587 - PP_0190 0.58 +1.1 242,587 - PP_0190 0.58 +0.8 242,587 - PP_0190 0.58 +0.3 242,587 - PP_0190 0.58 +0.9 242,768 + +0.3 242,840 - +2.5 242,840 - +2.2 242,840 - +2.8 242,847 + -0.5 242,850 + +0.7 242,860 + +0.3 242,880 + +0.4 242,880 + +1.9 242,907 + -0.1 242,908 - +2.3 242,924 + +0.4 243,006 + +1.1 243,037 + +2.9 243,038 - +0.6 243,203 + PP_0191 0.37 +3.2 243,203 + PP_0191 0.37 +3.2 243,319 + PP_0191 0.62 +2.6 243,319 + PP_0191 0.62 +2.1 243,554 + +2.4 243,554 + +1.2 243,554 + +0.8 243,555 - +0.9 243,590 + PP_0192 0.12 +0.7 243,590 + PP_0192 0.12 +0.9 243,610 + PP_0192 0.15 +1.4 243,611 - PP_0192 0.16 +1.0 243,743 + PP_0192 0.35 +0.0 243,744 - PP_0192 0.36 +1.0 243,744 - PP_0192 0.36 +1.0 243,744 - PP_0192 0.36 +0.7 243,807 - PP_0192 0.45 +0.9 243,824 - PP_0192 0.48 +1.0 243,824 - PP_0192 0.48 +2.0 243,839 + PP_0192 0.50 -0.4 243,839 + PP_0192 0.50 -0.3 243,856 - PP_0192 0.52 +1.3 243,978 - PP_0192 0.71 +0.0 244,067 + PP_0192 0.84 -1.6 244,068 - PP_0192 0.84 +1.6 244,136 + +0.1 244,137 - +0.7 244,162 + -0.1 244,187 + +0.9 244,187 + -0.5 244,188 - +1.9 244,188 - +0.8 244,188 - +1.6 244,210 + +0.8 244,242 - +1.4 244,249 - +0.6 244,287 + +0.7 244,287 + -0.4 244,287 + -1.4 244,287 + -0.2 244,288 - +1.2 244,288 - +0.7 244,288 - +0.3 244,288 - +0.6 244,288 - +1.0 244,290 + +1.0 244,290 + +1.4 244,290 + +0.8 244,290 + -0.6 244,291 - +0.7 244,291 - +0.9 244,319 + +1.7 244,347 + +0.9 244,351 + +0.6 244,352 - +2.1 244,359 + +0.4 244,360 - +1.9 244,531 + PP_0194 0.21 +0.8 244,532 - +0.4 244,625 + PP_0194 0.30 +0.6 244,625 + PP_0194 0.30 -0.3 244,681 - PP_0194 0.36 -0.2 244,684 + PP_0194 0.36 +1.0 244,684 + PP_0194 0.36 -0.4 244,684 + PP_0194 0.36 -0.1 244,684 + PP_0194 0.36 +1.1 244,685 - PP_0194 0.36 -0.2 245,053 + PP_0194 0.74 +0.7
Or see this region's nucleotide sequence