Strain Fitness in Serratia liquefaciens MT49 around IAI46_04500

Experiment: Uranyl Acetate Dihydrate 200 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04495 and IAI46_04500 are separated by 36 nucleotidesIAI46_04500 and IAI46_04505 are separated by 153 nucleotidesIAI46_04505 and IAI46_04510 are separated by 178 nucleotides IAI46_04495: IAI46_04495 - transcriptional regulator FeaR, at 968,888 to 969,802 _04495 IAI46_04500: IAI46_04500 - aldehyde dehydrogenase family protein, at 969,839 to 971,338 _04500 IAI46_04505: IAI46_04505 - leucine efflux protein LeuE, at 971,492 to 972,130 _04505 IAI46_04510: IAI46_04510 - SAM-dependent methyltransferase TehB, at 972,309 to 973,169 _04510 Position (kb) 969 970 971 972Strain fitness (log2 ratio) -2 -1 0 1 2 3at 969.027 kb on + strand, within IAI46_04495at 969.032 kb on - strand, within IAI46_04495at 969.209 kb on - strand, within IAI46_04495at 969.220 kb on + strand, within IAI46_04495at 969.252 kb on + strand, within IAI46_04495at 969.521 kb on - strand, within IAI46_04495at 969.626 kb on + strand, within IAI46_04495at 969.626 kb on + strand, within IAI46_04495at 969.626 kb on + strand, within IAI46_04495at 969.627 kb on - strand, within IAI46_04495at 969.627 kb on - strand, within IAI46_04495at 969.628 kb on + strand, within IAI46_04495at 969.628 kb on + strand, within IAI46_04495at 969.628 kb on + strand, within IAI46_04495at 969.628 kb on + strand, within IAI46_04495at 969.628 kb on + strand, within IAI46_04495at 969.628 kb on + strand, within IAI46_04495at 969.629 kb on - strand, within IAI46_04495at 969.667 kb on - strand, within IAI46_04495at 969.795 kb on - strandat 969.819 kb on - strandat 969.828 kb on + strandat 969.872 kb on - strandat 969.872 kb on - strandat 969.873 kb on + strandat 969.873 kb on + strandat 969.873 kb on + strandat 969.874 kb on - strandat 969.958 kb on + strandat 969.958 kb on + strandat 969.958 kb on + strandat 969.959 kb on - strandat 969.959 kb on - strandat 970.188 kb on + strand, within IAI46_04500at 970.188 kb on + strand, within IAI46_04500at 970.188 kb on + strand, within IAI46_04500at 970.188 kb on + strand, within IAI46_04500at 970.188 kb on + strand, within IAI46_04500at 970.188 kb on + strand, within IAI46_04500at 970.188 kb on + strand, within IAI46_04500at 970.188 kb on + strand, within IAI46_04500at 970.189 kb on - strand, within IAI46_04500at 970.189 kb on - strand, within IAI46_04500at 970.189 kb on - strand, within IAI46_04500at 970.384 kb on - strand, within IAI46_04500at 970.399 kb on + strand, within IAI46_04500at 970.400 kb on - strand, within IAI46_04500at 970.721 kb on + strand, within IAI46_04500at 970.798 kb on + strand, within IAI46_04500at 970.798 kb on + strand, within IAI46_04500at 970.798 kb on + strand, within IAI46_04500at 970.799 kb on - strand, within IAI46_04500at 970.859 kb on - strand, within IAI46_04500at 970.866 kb on + strand, within IAI46_04500at 970.866 kb on + strand, within IAI46_04500at 970.866 kb on + strand, within IAI46_04500at 970.866 kb on + strand, within IAI46_04500at 970.866 kb on + strand, within IAI46_04500at 970.866 kb on + strand, within IAI46_04500at 970.867 kb on - strand, within IAI46_04500at 970.867 kb on - strand, within IAI46_04500at 970.950 kb on + strand, within IAI46_04500at 970.977 kb on - strand, within IAI46_04500at 970.977 kb on - strand, within IAI46_04500at 971.070 kb on + strand, within IAI46_04500at 971.071 kb on - strand, within IAI46_04500at 971.083 kb on + strand, within IAI46_04500at 971.103 kb on - strand, within IAI46_04500at 971.129 kb on - strand, within IAI46_04500at 971.129 kb on - strand, within IAI46_04500at 971.150 kb on + strand, within IAI46_04500at 971.220 kb on + strandat 971.221 kb on - strandat 971.271 kb on + strandat 971.271 kb on + strandat 971.271 kb on + strandat 971.271 kb on + strandat 971.271 kb on + strandat 971.272 kb on - strandat 971.272 kb on - strandat 971.272 kb on - strandat 971.272 kb on - strandat 971.322 kb on - strandat 971.322 kb on - strandat 971.326 kb on + strandat 971.327 kb on - strandat 971.338 kb on + strandat 971.338 kb on + strandat 971.338 kb on + strandat 971.339 kb on - strandat 971.339 kb on - strandat 971.368 kb on + strandat 971.380 kb on + strandat 971.381 kb on - strandat 971.381 kb on - strandat 971.388 kb on + strandat 971.390 kb on + strandat 971.391 kb on - strandat 971.493 kb on + strandat 971.493 kb on + strandat 971.534 kb on + strandat 971.534 kb on + strandat 971.534 kb on + strandat 971.535 kb on - strandat 971.535 kb on - strandat 971.584 kb on + strand, within IAI46_04505at 971.631 kb on + strand, within IAI46_04505at 971.632 kb on - strand, within IAI46_04505at 971.632 kb on - strand, within IAI46_04505at 971.635 kb on + strand, within IAI46_04505at 971.694 kb on + strand, within IAI46_04505at 971.694 kb on + strand, within IAI46_04505at 971.695 kb on - strand, within IAI46_04505at 971.708 kb on - strand, within IAI46_04505at 971.730 kb on + strand, within IAI46_04505at 971.730 kb on + strand, within IAI46_04505at 971.730 kb on + strand, within IAI46_04505at 971.731 kb on - strand, within IAI46_04505at 971.731 kb on - strand, within IAI46_04505at 971.845 kb on - strand, within IAI46_04505at 971.875 kb on - strand, within IAI46_04505at 971.875 kb on - strand, within IAI46_04505at 971.946 kb on + strand, within IAI46_04505at 971.946 kb on + strand, within IAI46_04505at 971.947 kb on - strand, within IAI46_04505at 971.947 kb on - strand, within IAI46_04505at 971.998 kb on + strand, within IAI46_04505at 972.011 kb on + strand, within IAI46_04505at 972.012 kb on - strand, within IAI46_04505at 972.038 kb on + strand, within IAI46_04505at 972.039 kb on - strand, within IAI46_04505at 972.039 kb on - strand, within IAI46_04505at 972.042 kb on + strand, within IAI46_04505at 972.042 kb on + strand, within IAI46_04505at 972.043 kb on - strand, within IAI46_04505at 972.043 kb on - strand, within IAI46_04505at 972.073 kb on + strandat 972.073 kb on + strandat 972.073 kb on + strandat 972.074 kb on - strandat 972.077 kb on + strandat 972.078 kb on - strandat 972.078 kb on - strandat 972.094 kb on - strandat 972.094 kb on - strandat 972.165 kb on - strandat 972.174 kb on + strandat 972.174 kb on + strandat 972.175 kb on - strandat 972.175 kb on - strandat 972.229 kb on - strandat 972.229 kb on - strandat 972.249 kb on + strandat 972.310 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, anaerobic
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969,027 + IAI46_04495 0.15 +0.3
969,032 - IAI46_04495 0.16 +0.3
969,209 - IAI46_04495 0.35 +0.8
969,220 + IAI46_04495 0.36 +0.0
969,252 + IAI46_04495 0.40 -0.1
969,521 - IAI46_04495 0.69 +0.0
969,626 + IAI46_04495 0.81 +1.0
969,626 + IAI46_04495 0.81 -0.8
969,626 + IAI46_04495 0.81 -0.3
969,627 - IAI46_04495 0.81 +0.1
969,627 - IAI46_04495 0.81 +0.1
969,628 + IAI46_04495 0.81 -0.7
969,628 + IAI46_04495 0.81 -0.7
969,628 + IAI46_04495 0.81 +0.4
969,628 + IAI46_04495 0.81 -0.2
969,628 + IAI46_04495 0.81 +0.0
969,628 + IAI46_04495 0.81 +0.3
969,629 - IAI46_04495 0.81 -2.0
969,667 - IAI46_04495 0.85 +0.7
969,795 - +0.5
969,819 - +0.7
969,828 + -0.1
969,872 - +1.0
969,872 - +0.5
969,873 + +0.7
969,873 + +0.4
969,873 + +0.3
969,874 - -0.4
969,958 + +1.8
969,958 + -1.3
969,958 + +0.2
969,959 - +0.6
969,959 - +1.0
970,188 + IAI46_04500 0.23 +0.5
970,188 + IAI46_04500 0.23 -0.9
970,188 + IAI46_04500 0.23 +0.5
970,188 + IAI46_04500 0.23 +0.8
970,188 + IAI46_04500 0.23 +0.9
970,188 + IAI46_04500 0.23 -0.1
970,188 + IAI46_04500 0.23 -0.2
970,188 + IAI46_04500 0.23 -0.4
970,189 - IAI46_04500 0.23 -0.8
970,189 - IAI46_04500 0.23 -1.5
970,189 - IAI46_04500 0.23 +0.7
970,384 - IAI46_04500 0.36 -0.1
970,399 + IAI46_04500 0.37 -0.1
970,400 - IAI46_04500 0.37 +0.0
970,721 + IAI46_04500 0.59 +0.8
970,798 + IAI46_04500 0.64 -0.1
970,798 + IAI46_04500 0.64 -1.3
970,798 + IAI46_04500 0.64 -0.7
970,799 - IAI46_04500 0.64 +2.1
970,859 - IAI46_04500 0.68 +1.0
970,866 + IAI46_04500 0.68 +0.0
970,866 + IAI46_04500 0.68 +0.6
970,866 + IAI46_04500 0.68 -0.4
970,866 + IAI46_04500 0.68 +0.5
970,866 + IAI46_04500 0.68 -1.2
970,866 + IAI46_04500 0.68 -1.0
970,867 - IAI46_04500 0.69 +0.0
970,867 - IAI46_04500 0.69 -0.9
970,950 + IAI46_04500 0.74 +0.4
970,977 - IAI46_04500 0.76 -0.3
970,977 - IAI46_04500 0.76 -1.0
971,070 + IAI46_04500 0.82 +1.0
971,071 - IAI46_04500 0.82 -1.3
971,083 + IAI46_04500 0.83 -0.5
971,103 - IAI46_04500 0.84 +0.7
971,129 - IAI46_04500 0.86 -0.5
971,129 - IAI46_04500 0.86 -0.9
971,150 + IAI46_04500 0.87 -0.3
971,220 + +0.3
971,221 - +0.5
971,271 + +0.4
971,271 + +0.1
971,271 + -0.6
971,271 + -0.7
971,271 + -0.5
971,272 - -0.3
971,272 - -0.4
971,272 - +0.5
971,272 - -0.2
971,322 - -0.0
971,322 - -1.9
971,326 + +1.5
971,327 - +1.3
971,338 + -0.0
971,338 + +0.5
971,338 + +0.6
971,339 - -1.6
971,339 - +0.2
971,368 + +0.2
971,380 + +0.1
971,381 - -0.3
971,381 - +1.1
971,388 + -0.1
971,390 + +1.0
971,391 - +0.3
971,493 + +0.4
971,493 + +0.1
971,534 + -0.1
971,534 + -0.2
971,534 + +0.5
971,535 - +0.1
971,535 - +1.0
971,584 + IAI46_04505 0.14 +0.4
971,631 + IAI46_04505 0.22 -0.9
971,632 - IAI46_04505 0.22 -0.7
971,632 - IAI46_04505 0.22 -0.1
971,635 + IAI46_04505 0.22 +0.9
971,694 + IAI46_04505 0.32 +0.5
971,694 + IAI46_04505 0.32 +0.0
971,695 - IAI46_04505 0.32 -0.0
971,708 - IAI46_04505 0.34 +0.3
971,730 + IAI46_04505 0.37 -0.3
971,730 + IAI46_04505 0.37 +0.5
971,730 + IAI46_04505 0.37 +0.1
971,731 - IAI46_04505 0.37 +0.2
971,731 - IAI46_04505 0.37 +0.5
971,845 - IAI46_04505 0.55 -1.9
971,875 - IAI46_04505 0.60 -0.1
971,875 - IAI46_04505 0.60 +0.4
971,946 + IAI46_04505 0.71 +0.4
971,946 + IAI46_04505 0.71 +0.3
971,947 - IAI46_04505 0.71 +0.5
971,947 - IAI46_04505 0.71 +0.3
971,998 + IAI46_04505 0.79 -0.5
972,011 + IAI46_04505 0.81 -0.6
972,012 - IAI46_04505 0.81 +0.1
972,038 + IAI46_04505 0.85 -0.5
972,039 - IAI46_04505 0.86 -1.7
972,039 - IAI46_04505 0.86 -1.6
972,042 + IAI46_04505 0.86 +0.5
972,042 + IAI46_04505 0.86 +0.8
972,043 - IAI46_04505 0.86 +0.6
972,043 - IAI46_04505 0.86 -0.1
972,073 + +0.4
972,073 + -0.2
972,073 + -0.0
972,074 - +0.2
972,077 + +0.8
972,078 - +0.5
972,078 - -0.2
972,094 - +3.1
972,094 - +1.4
972,165 - +0.1
972,174 + -1.2
972,174 + +1.9
972,175 - +0.1
972,175 - -1.9
972,229 - +0.6
972,229 - +0.3
972,249 + -0.2
972,310 + -0.0

Or see this region's nucleotide sequence