Strain Fitness in Serratia liquefaciens MT49 around IAI46_04065

Experiment: Uranyl Acetate Dihydrate 200 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04055 and IAI46_04060 overlap by 4 nucleotidesIAI46_04060 and IAI46_04065 overlap by 10 nucleotidesIAI46_04065 and IAI46_04070 overlap by 4 nucleotidesIAI46_04070 and IAI46_04075 overlap by 4 nucleotides IAI46_04055: IAI46_04055 - acyl-CoA synthetase, at 874,878 to 876,209 _04055 IAI46_04060: IAI46_04060 - hydroxymyristoyl-ACP dehydratase, at 876,206 to 876,550 _04060 IAI46_04065: IAI46_04065 - glycosyltransferase family 2 protein, at 876,541 to 878,259 _04065 IAI46_04070: IAI46_04070 - acyl-CoA thioesterase, at 878,256 to 878,684 _04070 IAI46_04075: IAI46_04075 - outer membrane lipoprotein carrier protein LolA, at 878,681 to 879,286 _04075 Position (kb) 876 877 878 879Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 875.650 kb on + strand, within IAI46_04055at 875.667 kb on + strand, within IAI46_04055at 875.752 kb on + strand, within IAI46_04055at 875.867 kb on - strand, within IAI46_04055at 875.867 kb on - strand, within IAI46_04055at 875.867 kb on - strand, within IAI46_04055at 875.889 kb on - strand, within IAI46_04055at 875.891 kb on + strand, within IAI46_04055at 875.891 kb on + strand, within IAI46_04055at 875.891 kb on + strand, within IAI46_04055at 875.892 kb on - strand, within IAI46_04055at 875.892 kb on - strand, within IAI46_04055at 875.892 kb on - strand, within IAI46_04055at 875.938 kb on + strand, within IAI46_04055at 875.939 kb on - strand, within IAI46_04055at 876.180 kb on + strandat 876.181 kb on - strandat 876.191 kb on - strandat 876.205 kb on + strandat 876.205 kb on + strandat 876.205 kb on + strandat 876.206 kb on - strandat 876.206 kb on - strandat 876.206 kb on - strandat 876.359 kb on + strand, within IAI46_04060at 876.359 kb on + strand, within IAI46_04060at 876.359 kb on + strand, within IAI46_04060at 876.359 kb on + strand, within IAI46_04060at 876.359 kb on + strand, within IAI46_04060at 876.360 kb on - strand, within IAI46_04060at 876.360 kb on - strand, within IAI46_04060at 876.541 kb on - strandat 876.576 kb on + strandat 876.588 kb on + strandat 876.634 kb on + strandat 876.803 kb on - strand, within IAI46_04065at 876.852 kb on + strand, within IAI46_04065at 876.853 kb on - strand, within IAI46_04065at 876.853 kb on - strand, within IAI46_04065at 876.854 kb on + strand, within IAI46_04065at 876.855 kb on - strand, within IAI46_04065at 876.855 kb on - strand, within IAI46_04065at 876.855 kb on - strand, within IAI46_04065at 876.855 kb on - strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.946 kb on + strand, within IAI46_04065at 876.946 kb on + strand, within IAI46_04065at 876.955 kb on + strand, within IAI46_04065at 876.956 kb on - strand, within IAI46_04065at 877.001 kb on + strand, within IAI46_04065at 877.001 kb on + strand, within IAI46_04065at 877.002 kb on - strand, within IAI46_04065at 877.117 kb on + strand, within IAI46_04065at 877.118 kb on - strand, within IAI46_04065at 877.118 kb on - strand, within IAI46_04065at 877.118 kb on - strand, within IAI46_04065at 877.118 kb on - strand, within IAI46_04065at 877.203 kb on + strand, within IAI46_04065at 877.212 kb on + strand, within IAI46_04065at 877.363 kb on + strand, within IAI46_04065at 877.446 kb on + strand, within IAI46_04065at 877.462 kb on + strand, within IAI46_04065at 877.463 kb on - strand, within IAI46_04065at 877.463 kb on - strand, within IAI46_04065at 877.463 kb on - strand, within IAI46_04065at 877.610 kb on + strand, within IAI46_04065at 877.654 kb on - strand, within IAI46_04065at 877.747 kb on - strand, within IAI46_04065at 877.814 kb on + strand, within IAI46_04065at 878.068 kb on + strand, within IAI46_04065at 878.167 kb on + strandat 878.168 kb on - strandat 878.264 kb on + strandat 878.264 kb on + strandat 878.265 kb on - strandat 878.348 kb on + strand, within IAI46_04070at 878.348 kb on + strand, within IAI46_04070at 878.348 kb on + strand, within IAI46_04070at 878.348 kb on + strand, within IAI46_04070at 878.352 kb on + strand, within IAI46_04070at 878.352 kb on + strand, within IAI46_04070at 878.352 kb on + strand, within IAI46_04070at 878.353 kb on - strand, within IAI46_04070at 878.362 kb on - strand, within IAI46_04070at 878.403 kb on + strand, within IAI46_04070at 878.403 kb on + strand, within IAI46_04070at 878.404 kb on - strand, within IAI46_04070at 878.433 kb on + strand, within IAI46_04070at 878.433 kb on + strand, within IAI46_04070at 878.434 kb on - strand, within IAI46_04070at 878.434 kb on - strand, within IAI46_04070at 878.449 kb on + strand, within IAI46_04070at 878.449 kb on + strand, within IAI46_04070at 878.450 kb on - strand, within IAI46_04070at 878.468 kb on + strand, within IAI46_04070at 878.575 kb on + strand, within IAI46_04070at 878.576 kb on - strand, within IAI46_04070at 878.594 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.598 kb on - strand, within IAI46_04070at 878.654 kb on - strandat 879.148 kb on + strand, within IAI46_04075at 879.148 kb on + strand, within IAI46_04075at 879.178 kb on + strand, within IAI46_04075at 879.178 kb on + strand, within IAI46_04075at 879.179 kb on - strand, within IAI46_04075at 879.179 kb on - strand, within IAI46_04075at 879.205 kb on + strand, within IAI46_04075at 879.235 kb on + strandat 879.235 kb on + strandat 879.236 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, anaerobic
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875,650 + IAI46_04055 0.58 -0.0
875,667 + IAI46_04055 0.59 +0.1
875,752 + IAI46_04055 0.66 +1.4
875,867 - IAI46_04055 0.74 -0.9
875,867 - IAI46_04055 0.74 -1.6
875,867 - IAI46_04055 0.74 -1.8
875,889 - IAI46_04055 0.76 +0.4
875,891 + IAI46_04055 0.76 +1.6
875,891 + IAI46_04055 0.76 +0.4
875,891 + IAI46_04055 0.76 -0.2
875,892 - IAI46_04055 0.76 +0.4
875,892 - IAI46_04055 0.76 -0.1
875,892 - IAI46_04055 0.76 -0.2
875,938 + IAI46_04055 0.80 +0.6
875,939 - IAI46_04055 0.80 -1.0
876,180 + +0.6
876,181 - +2.3
876,191 - +0.7
876,205 + +0.1
876,205 + -0.3
876,205 + -0.2
876,206 - +0.0
876,206 - -0.7
876,206 - -0.7
876,359 + IAI46_04060 0.44 -0.0
876,359 + IAI46_04060 0.44 -0.8
876,359 + IAI46_04060 0.44 -0.0
876,359 + IAI46_04060 0.44 -0.6
876,359 + IAI46_04060 0.44 -0.3
876,360 - IAI46_04060 0.45 -0.1
876,360 - IAI46_04060 0.45 -0.1
876,541 - +0.5
876,576 + +0.7
876,588 + -0.8
876,634 + -1.5
876,803 - IAI46_04065 0.15 +0.1
876,852 + IAI46_04065 0.18 +1.0
876,853 - IAI46_04065 0.18 +0.5
876,853 - IAI46_04065 0.18 -0.5
876,854 + IAI46_04065 0.18 +0.9
876,855 - IAI46_04065 0.18 +0.3
876,855 - IAI46_04065 0.18 -0.8
876,855 - IAI46_04065 0.18 +0.3
876,855 - IAI46_04065 0.18 -0.2
876,916 + IAI46_04065 0.22 +2.4
876,916 + IAI46_04065 0.22 -0.6
876,916 + IAI46_04065 0.22 -0.9
876,916 + IAI46_04065 0.22 -0.6
876,916 + IAI46_04065 0.22 -0.4
876,946 + IAI46_04065 0.24 -0.8
876,946 + IAI46_04065 0.24 -1.1
876,955 + IAI46_04065 0.24 -1.2
876,956 - IAI46_04065 0.24 -0.8
877,001 + IAI46_04065 0.27 +1.0
877,001 + IAI46_04065 0.27 -1.7
877,002 - IAI46_04065 0.27 -1.0
877,117 + IAI46_04065 0.34 +0.8
877,118 - IAI46_04065 0.34 -0.7
877,118 - IAI46_04065 0.34 +0.9
877,118 - IAI46_04065 0.34 -0.3
877,118 - IAI46_04065 0.34 +1.8
877,203 + IAI46_04065 0.39 +0.0
877,212 + IAI46_04065 0.39 -0.4
877,363 + IAI46_04065 0.48 -0.4
877,446 + IAI46_04065 0.53 -0.4
877,462 + IAI46_04065 0.54 +0.1
877,463 - IAI46_04065 0.54 -2.9
877,463 - IAI46_04065 0.54 -1.9
877,463 - IAI46_04065 0.54 -0.0
877,610 + IAI46_04065 0.62 -0.4
877,654 - IAI46_04065 0.65 -0.7
877,747 - IAI46_04065 0.70 +0.9
877,814 + IAI46_04065 0.74 +0.9
878,068 + IAI46_04065 0.89 -0.5
878,167 + -1.0
878,168 - +0.3
878,264 + -0.7
878,264 + -0.3
878,265 - -0.2
878,348 + IAI46_04070 0.21 +0.0
878,348 + IAI46_04070 0.21 -0.5
878,348 + IAI46_04070 0.21 +0.2
878,348 + IAI46_04070 0.21 +0.2
878,352 + IAI46_04070 0.22 -0.5
878,352 + IAI46_04070 0.22 +1.1
878,352 + IAI46_04070 0.22 +0.3
878,353 - IAI46_04070 0.23 +0.9
878,362 - IAI46_04070 0.25 +0.7
878,403 + IAI46_04070 0.34 -0.2
878,403 + IAI46_04070 0.34 +0.1
878,404 - IAI46_04070 0.34 -0.2
878,433 + IAI46_04070 0.41 -0.8
878,433 + IAI46_04070 0.41 +0.3
878,434 - IAI46_04070 0.41 -0.3
878,434 - IAI46_04070 0.41 +1.4
878,449 + IAI46_04070 0.45 +0.1
878,449 + IAI46_04070 0.45 -0.1
878,450 - IAI46_04070 0.45 +1.1
878,468 + IAI46_04070 0.49 +0.7
878,575 + IAI46_04070 0.74 +0.6
878,576 - IAI46_04070 0.75 +0.5
878,594 + IAI46_04070 0.79 +0.0
878,597 + IAI46_04070 0.79 +0.2
878,597 + IAI46_04070 0.79 +0.4
878,597 + IAI46_04070 0.79 +0.4
878,597 + IAI46_04070 0.79 -0.3
878,597 + IAI46_04070 0.79 +0.2
878,597 + IAI46_04070 0.79 +0.4
878,597 + IAI46_04070 0.79 +1.1
878,598 - IAI46_04070 0.80 +0.1
878,654 - -0.5
879,148 + IAI46_04075 0.77 +0.5
879,148 + IAI46_04075 0.77 -0.5
879,178 + IAI46_04075 0.82 +0.3
879,178 + IAI46_04075 0.82 -1.2
879,179 - IAI46_04075 0.82 +0.3
879,179 - IAI46_04075 0.82 -0.1
879,205 + IAI46_04075 0.86 -0.0
879,235 + +1.1
879,235 + +0.3
879,236 - +0.2

Or see this region's nucleotide sequence