Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4316

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4314 and EX28DRAFT_4315 overlap by 1 nucleotidesEX28DRAFT_4315 and EX28DRAFT_4316 overlap by 4 nucleotidesEX28DRAFT_4316 and EX28DRAFT_4317 are separated by 63 nucleotidesEX28DRAFT_4317 and EX28DRAFT_4318 are separated by 367 nucleotides EX28DRAFT_4314: EX28DRAFT_4314 - Bacterial putative lipoprotein (DUF940), at 118,033 to 120,129 _4314 EX28DRAFT_4315: EX28DRAFT_4315 - Capsule biosynthesis GfcC, at 120,129 to 120,866 _4315 EX28DRAFT_4316: EX28DRAFT_4316 - Group 4 capsule polysaccharide formation lipoprotein gfcB, at 120,863 to 121,501 _4316 EX28DRAFT_4317: EX28DRAFT_4317 - Exopolysaccharide production protein YjbE, at 121,565 to 121,807 _4317 EX28DRAFT_4318: EX28DRAFT_4318 - Glucose-6-phosphate isomerase, at 122,175 to 123,824 _4318 Position (kb) 120 121 122Strain fitness (log2 ratio) -1 0 1 2at 119.883 kb on + strand, within EX28DRAFT_4314at 119.914 kb on + strand, within EX28DRAFT_4314at 119.915 kb on - strand, within EX28DRAFT_4314at 119.915 kb on - strand, within EX28DRAFT_4314at 119.915 kb on - strand, within EX28DRAFT_4314at 119.934 kb on - strandat 119.936 kb on + strandat 119.937 kb on - strandat 119.961 kb on - strandat 119.964 kb on + strandat 119.971 kb on - strandat 120.013 kb on + strandat 120.111 kb on - strandat 120.116 kb on + strandat 120.116 kb on + strandat 120.185 kb on - strandat 120.239 kb on + strand, within EX28DRAFT_4315at 120.240 kb on - strand, within EX28DRAFT_4315at 120.258 kb on - strand, within EX28DRAFT_4315at 120.266 kb on - strand, within EX28DRAFT_4315at 120.316 kb on + strand, within EX28DRAFT_4315at 120.458 kb on + strand, within EX28DRAFT_4315at 120.458 kb on + strand, within EX28DRAFT_4315at 120.459 kb on - strand, within EX28DRAFT_4315at 120.459 kb on - strand, within EX28DRAFT_4315at 120.459 kb on - strand, within EX28DRAFT_4315at 120.460 kb on + strand, within EX28DRAFT_4315at 120.921 kb on + strandat 121.102 kb on + strand, within EX28DRAFT_4316at 121.103 kb on - strand, within EX28DRAFT_4316at 121.103 kb on - strand, within EX28DRAFT_4316at 121.344 kb on + strand, within EX28DRAFT_4316at 121.345 kb on - strand, within EX28DRAFT_4316at 121.345 kb on - strand, within EX28DRAFT_4316at 121.356 kb on + strand, within EX28DRAFT_4316at 121.356 kb on + strand, within EX28DRAFT_4316at 121.391 kb on + strand, within EX28DRAFT_4316at 121.392 kb on - strand, within EX28DRAFT_4316at 121.392 kb on - strand, within EX28DRAFT_4316at 121.441 kb on + strandat 121.526 kb on - strandat 121.796 kb on + strandat 121.881 kb on - strandat 122.172 kb on + strandat 122.176 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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119,883 + EX28DRAFT_4314 0.88 +0.4
119,914 + EX28DRAFT_4314 0.90 -0.6
119,915 - EX28DRAFT_4314 0.90 +2.3
119,915 - EX28DRAFT_4314 0.90 -0.1
119,915 - EX28DRAFT_4314 0.90 -0.3
119,934 - -0.7
119,936 + -0.1
119,937 - +0.5
119,961 - +0.8
119,964 + +0.3
119,971 - +0.3
120,013 + +0.1
120,111 - -0.4
120,116 + -0.6
120,116 + +1.3
120,185 - -0.0
120,239 + EX28DRAFT_4315 0.15 +0.2
120,240 - EX28DRAFT_4315 0.15 -0.2
120,258 - EX28DRAFT_4315 0.17 -0.2
120,266 - EX28DRAFT_4315 0.19 +1.0
120,316 + EX28DRAFT_4315 0.25 -0.1
120,458 + EX28DRAFT_4315 0.45 +1.1
120,458 + EX28DRAFT_4315 0.45 +0.3
120,459 - EX28DRAFT_4315 0.45 +0.1
120,459 - EX28DRAFT_4315 0.45 +0.0
120,459 - EX28DRAFT_4315 0.45 +0.4
120,460 + EX28DRAFT_4315 0.45 -0.5
120,921 + -0.8
121,102 + EX28DRAFT_4316 0.37 +0.8
121,103 - EX28DRAFT_4316 0.38 -0.5
121,103 - EX28DRAFT_4316 0.38 +0.2
121,344 + EX28DRAFT_4316 0.75 +0.7
121,345 - EX28DRAFT_4316 0.75 +2.6
121,345 - EX28DRAFT_4316 0.75 -1.0
121,356 + EX28DRAFT_4316 0.77 -0.4
121,356 + EX28DRAFT_4316 0.77 +0.4
121,391 + EX28DRAFT_4316 0.83 +1.7
121,392 - EX28DRAFT_4316 0.83 +1.1
121,392 - EX28DRAFT_4316 0.83 -0.4
121,441 + -1.0
121,526 - -0.2
121,796 + -0.7
121,881 - -1.3
122,172 + +0.1
122,176 + +0.2

Or see this region's nucleotide sequence