Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4290

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4288 and EX28DRAFT_4289 overlap by 4 nucleotidesEX28DRAFT_4289 and EX28DRAFT_4290 are separated by 46 nucleotidesEX28DRAFT_4290 and EX28DRAFT_4291 are separated by 152 nucleotidesEX28DRAFT_4291 and EX28DRAFT_4292 are separated by 119 nucleotidesEX28DRAFT_4292 and EX28DRAFT_4293 are separated by 116 nucleotides EX28DRAFT_4288: EX28DRAFT_4288 - ABC-type branched-chain amino acid transport system, permease component, at 91,864 to 93,141 _4288 EX28DRAFT_4289: EX28DRAFT_4289 - Branched-chain amino acid ABC-type transport system, permease components, at 93,138 to 94,064 _4289 EX28DRAFT_4290: EX28DRAFT_4290 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 94,111 to 95,220 _4290 EX28DRAFT_4291: EX28DRAFT_4291 - hypothetical protein, at 95,373 to 95,525 _4291 EX28DRAFT_4292: EX28DRAFT_4292 - Acetyltransferase (GNAT) domain, at 95,645 to 96,034 _4292 EX28DRAFT_4293: EX28DRAFT_4293 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 96,151 to 97,245 _4293 Position (kb) 94 95 96Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 93.141 kb on + strandat 93.227 kb on + strandat 93.228 kb on - strandat 93.228 kb on - strandat 93.230 kb on - strandat 93.244 kb on + strand, within EX28DRAFT_4289at 93.367 kb on + strand, within EX28DRAFT_4289at 93.454 kb on - strand, within EX28DRAFT_4289at 93.569 kb on + strand, within EX28DRAFT_4289at 93.570 kb on - strand, within EX28DRAFT_4289at 93.570 kb on - strand, within EX28DRAFT_4289at 93.704 kb on - strand, within EX28DRAFT_4289at 93.899 kb on + strand, within EX28DRAFT_4289at 93.910 kb on + strand, within EX28DRAFT_4289at 93.910 kb on + strand, within EX28DRAFT_4289at 93.911 kb on - strand, within EX28DRAFT_4289at 93.911 kb on - strand, within EX28DRAFT_4289at 93.915 kb on - strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.926 kb on - strand, within EX28DRAFT_4289at 93.926 kb on - strand, within EX28DRAFT_4289at 93.926 kb on - strand, within EX28DRAFT_4289at 93.926 kb on - strand, within EX28DRAFT_4289at 93.926 kb on - strand, within EX28DRAFT_4289at 93.927 kb on + strand, within EX28DRAFT_4289at 93.927 kb on + strand, within EX28DRAFT_4289at 93.927 kb on + strand, within EX28DRAFT_4289at 93.927 kb on + strand, within EX28DRAFT_4289at 93.977 kb on + strandat 93.977 kb on + strandat 93.977 kb on + strandat 93.978 kb on - strandat 94.001 kb on - strandat 94.045 kb on + strandat 94.064 kb on + strandat 94.079 kb on - strandat 94.149 kb on + strandat 94.311 kb on - strand, within EX28DRAFT_4290at 94.326 kb on - strand, within EX28DRAFT_4290at 94.326 kb on - strand, within EX28DRAFT_4290at 94.544 kb on + strand, within EX28DRAFT_4290at 94.557 kb on - strand, within EX28DRAFT_4290at 94.559 kb on + strand, within EX28DRAFT_4290at 94.559 kb on + strand, within EX28DRAFT_4290at 94.760 kb on + strand, within EX28DRAFT_4290at 94.760 kb on + strand, within EX28DRAFT_4290at 94.761 kb on - strand, within EX28DRAFT_4290at 94.761 kb on - strand, within EX28DRAFT_4290at 94.886 kb on + strand, within EX28DRAFT_4290at 94.887 kb on - strand, within EX28DRAFT_4290at 94.937 kb on + strand, within EX28DRAFT_4290at 95.006 kb on + strand, within EX28DRAFT_4290at 95.262 kb on + strandat 95.263 kb on - strandat 95.271 kb on + strandat 95.272 kb on - strandat 95.396 kb on - strand, within EX28DRAFT_4291at 95.597 kb on + strandat 95.597 kb on + strandat 95.598 kb on - strandat 95.606 kb on + strandat 95.617 kb on + strandat 95.639 kb on + strandat 95.639 kb on + strandat 95.639 kb on + strandat 95.639 kb on + strandat 95.639 kb on + strandat 95.643 kb on + strandat 95.720 kb on + strand, within EX28DRAFT_4292at 95.721 kb on - strand, within EX28DRAFT_4292at 95.762 kb on + strand, within EX28DRAFT_4292at 95.762 kb on + strand, within EX28DRAFT_4292at 95.777 kb on - strand, within EX28DRAFT_4292at 95.883 kb on - strand, within EX28DRAFT_4292at 95.887 kb on - strand, within EX28DRAFT_4292at 95.887 kb on - strand, within EX28DRAFT_4292

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
93,141 + -1.0
93,227 + +0.6
93,228 - -0.1
93,228 - -2.6
93,230 - +1.4
93,244 + EX28DRAFT_4289 0.11 +0.1
93,367 + EX28DRAFT_4289 0.25 +0.2
93,454 - EX28DRAFT_4289 0.34 +0.2
93,569 + EX28DRAFT_4289 0.46 -0.9
93,570 - EX28DRAFT_4289 0.47 +0.6
93,570 - EX28DRAFT_4289 0.47 -1.2
93,704 - EX28DRAFT_4289 0.61 +0.3
93,899 + EX28DRAFT_4289 0.82 +0.6
93,910 + EX28DRAFT_4289 0.83 -1.2
93,910 + EX28DRAFT_4289 0.83 +1.4
93,911 - EX28DRAFT_4289 0.83 +1.3
93,911 - EX28DRAFT_4289 0.83 -0.2
93,915 - EX28DRAFT_4289 0.84 +1.5
93,925 + EX28DRAFT_4289 0.85 +0.2
93,925 + EX28DRAFT_4289 0.85 -0.8
93,925 + EX28DRAFT_4289 0.85 +0.4
93,925 + EX28DRAFT_4289 0.85 -1.8
93,925 + EX28DRAFT_4289 0.85 +0.6
93,925 + EX28DRAFT_4289 0.85 +0.5
93,925 + EX28DRAFT_4289 0.85 -1.0
93,926 - EX28DRAFT_4289 0.85 -0.2
93,926 - EX28DRAFT_4289 0.85 +0.8
93,926 - EX28DRAFT_4289 0.85 +0.0
93,926 - EX28DRAFT_4289 0.85 -1.9
93,926 - EX28DRAFT_4289 0.85 -0.8
93,927 + EX28DRAFT_4289 0.85 -3.9
93,927 + EX28DRAFT_4289 0.85 +1.3
93,927 + EX28DRAFT_4289 0.85 -0.7
93,927 + EX28DRAFT_4289 0.85 +1.8
93,977 + -0.1
93,977 + -0.6
93,977 + -1.4
93,978 - -0.8
94,001 - +1.7
94,045 + -2.2
94,064 + +0.1
94,079 - +0.3
94,149 + -2.1
94,311 - EX28DRAFT_4290 0.18 -0.5
94,326 - EX28DRAFT_4290 0.19 -0.3
94,326 - EX28DRAFT_4290 0.19 +0.9
94,544 + EX28DRAFT_4290 0.39 -0.2
94,557 - EX28DRAFT_4290 0.40 -1.2
94,559 + EX28DRAFT_4290 0.40 +0.1
94,559 + EX28DRAFT_4290 0.40 +1.0
94,760 + EX28DRAFT_4290 0.58 +0.7
94,760 + EX28DRAFT_4290 0.58 -2.8
94,761 - EX28DRAFT_4290 0.59 +0.4
94,761 - EX28DRAFT_4290 0.59 +0.9
94,886 + EX28DRAFT_4290 0.70 +0.2
94,887 - EX28DRAFT_4290 0.70 +0.2
94,937 + EX28DRAFT_4290 0.74 -0.0
95,006 + EX28DRAFT_4290 0.81 +0.1
95,262 + -1.0
95,263 - -1.6
95,271 + -0.2
95,272 - -1.2
95,396 - EX28DRAFT_4291 0.15 -0.0
95,597 + +0.5
95,597 + -0.3
95,598 - +3.3
95,606 + +0.1
95,617 + +0.0
95,639 + +0.3
95,639 + +0.4
95,639 + -1.2
95,639 + -0.6
95,639 + +0.5
95,643 + +0.4
95,720 + EX28DRAFT_4292 0.19 -1.2
95,721 - EX28DRAFT_4292 0.19 +0.4
95,762 + EX28DRAFT_4292 0.30 -1.9
95,762 + EX28DRAFT_4292 0.30 +1.0
95,777 - EX28DRAFT_4292 0.34 -1.0
95,883 - EX28DRAFT_4292 0.61 +0.4
95,887 - EX28DRAFT_4292 0.62 -0.4
95,887 - EX28DRAFT_4292 0.62 -0.8

Or see this region's nucleotide sequence