Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4286

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4285 and EX28DRAFT_4286 are separated by 254 nucleotidesEX28DRAFT_4286 and EX28DRAFT_4287 are separated by 1 nucleotidesEX28DRAFT_4287 and EX28DRAFT_4288 overlap by 4 nucleotides EX28DRAFT_4285: EX28DRAFT_4285 - ABC-type sugar transport system, periplasmic component, at 88,814 to 90,130 _4285 EX28DRAFT_4286: EX28DRAFT_4286 - ABC-type branched-chain amino acid transport systems, ATPase component, at 90,385 to 91,098 _4286 EX28DRAFT_4287: EX28DRAFT_4287 - ABC-type branched-chain amino acid transport systems, ATPase component, at 91,100 to 91,867 _4287 EX28DRAFT_4288: EX28DRAFT_4288 - ABC-type branched-chain amino acid transport system, permease component, at 91,864 to 93,141 _4288 Position (kb) 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 89.389 kb on - strand, within EX28DRAFT_4285at 89.389 kb on - strand, within EX28DRAFT_4285at 89.607 kb on + strand, within EX28DRAFT_4285at 89.608 kb on - strand, within EX28DRAFT_4285at 89.608 kb on - strand, within EX28DRAFT_4285at 89.682 kb on + strand, within EX28DRAFT_4285at 89.682 kb on + strand, within EX28DRAFT_4285at 89.682 kb on + strand, within EX28DRAFT_4285at 89.682 kb on + strand, within EX28DRAFT_4285at 89.685 kb on + strand, within EX28DRAFT_4285at 89.686 kb on - strand, within EX28DRAFT_4285at 89.748 kb on + strand, within EX28DRAFT_4285at 89.749 kb on - strand, within EX28DRAFT_4285at 89.869 kb on - strand, within EX28DRAFT_4285at 89.876 kb on + strand, within EX28DRAFT_4285at 89.938 kb on - strand, within EX28DRAFT_4285at 89.938 kb on - strand, within EX28DRAFT_4285at 89.949 kb on + strand, within EX28DRAFT_4285at 90.144 kb on - strandat 90.144 kb on - strandat 90.174 kb on + strandat 90.175 kb on - strandat 90.234 kb on + strandat 90.235 kb on - strandat 90.382 kb on + strandat 90.382 kb on + strandat 90.398 kb on + strandat 90.561 kb on + strand, within EX28DRAFT_4286at 90.738 kb on - strand, within EX28DRAFT_4286at 90.738 kb on - strand, within EX28DRAFT_4286at 90.739 kb on + strand, within EX28DRAFT_4286at 90.739 kb on + strand, within EX28DRAFT_4286at 90.740 kb on - strand, within EX28DRAFT_4286at 90.901 kb on - strand, within EX28DRAFT_4286at 91.102 kb on - strandat 91.102 kb on - strandat 91.194 kb on + strand, within EX28DRAFT_4287at 91.194 kb on + strand, within EX28DRAFT_4287at 91.194 kb on + strand, within EX28DRAFT_4287at 91.194 kb on + strand, within EX28DRAFT_4287at 91.195 kb on - strand, within EX28DRAFT_4287at 91.199 kb on - strand, within EX28DRAFT_4287at 91.704 kb on + strand, within EX28DRAFT_4287at 91.853 kb on + strandat 91.853 kb on + strandat 91.988 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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89,389 - EX28DRAFT_4285 0.44 -0.9
89,389 - EX28DRAFT_4285 0.44 -0.7
89,607 + EX28DRAFT_4285 0.60 -0.3
89,608 - EX28DRAFT_4285 0.60 +0.2
89,608 - EX28DRAFT_4285 0.60 +0.6
89,682 + EX28DRAFT_4285 0.66 -0.3
89,682 + EX28DRAFT_4285 0.66 -0.3
89,682 + EX28DRAFT_4285 0.66 -2.6
89,682 + EX28DRAFT_4285 0.66 -0.6
89,685 + EX28DRAFT_4285 0.66 -1.6
89,686 - EX28DRAFT_4285 0.66 -1.5
89,748 + EX28DRAFT_4285 0.71 +0.1
89,749 - EX28DRAFT_4285 0.71 -2.1
89,869 - EX28DRAFT_4285 0.80 +1.5
89,876 + EX28DRAFT_4285 0.81 -0.4
89,938 - EX28DRAFT_4285 0.85 +1.3
89,938 - EX28DRAFT_4285 0.85 -1.2
89,949 + EX28DRAFT_4285 0.86 +1.7
90,144 - +0.7
90,144 - +2.1
90,174 + +1.0
90,175 - -0.4
90,234 + -0.9
90,235 - -1.1
90,382 + -2.9
90,382 + +0.3
90,398 + +0.3
90,561 + EX28DRAFT_4286 0.25 -1.8
90,738 - EX28DRAFT_4286 0.49 -0.7
90,738 - EX28DRAFT_4286 0.49 -0.0
90,739 + EX28DRAFT_4286 0.50 -1.1
90,739 + EX28DRAFT_4286 0.50 -1.9
90,740 - EX28DRAFT_4286 0.50 -0.7
90,901 - EX28DRAFT_4286 0.72 +0.1
91,102 - -1.5
91,102 - -1.3
91,194 + EX28DRAFT_4287 0.12 +0.8
91,194 + EX28DRAFT_4287 0.12 -0.8
91,194 + EX28DRAFT_4287 0.12 +0.8
91,194 + EX28DRAFT_4287 0.12 +1.1
91,195 - EX28DRAFT_4287 0.12 -1.2
91,199 - EX28DRAFT_4287 0.13 +0.4
91,704 + EX28DRAFT_4287 0.79 +0.8
91,853 + -0.0
91,853 + -0.0
91,988 + +0.4

Or see this region's nucleotide sequence