Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4169

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4168 and EX28DRAFT_4169 are separated by 21 nucleotidesEX28DRAFT_4169 and EX28DRAFT_4170 are separated by 86 nucleotides EX28DRAFT_4168: EX28DRAFT_4168 - SIR2-like domain, at 149,144 to 152,260 _4168 EX28DRAFT_4169: EX28DRAFT_4169 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 152,282 to 152,845 _4169 EX28DRAFT_4170: EX28DRAFT_4170 - transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family, at 152,932 to 154,152 _4170 Position (kb) 152 153Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 151.282 kb on + strand, within EX28DRAFT_4168at 151.282 kb on + strand, within EX28DRAFT_4168at 151.282 kb on + strand, within EX28DRAFT_4168at 151.282 kb on + strand, within EX28DRAFT_4168at 151.282 kb on + strand, within EX28DRAFT_4168at 151.288 kb on + strand, within EX28DRAFT_4168at 151.289 kb on - strand, within EX28DRAFT_4168at 151.303 kb on - strand, within EX28DRAFT_4168at 151.507 kb on + strand, within EX28DRAFT_4168at 151.660 kb on + strand, within EX28DRAFT_4168at 151.660 kb on + strand, within EX28DRAFT_4168at 151.661 kb on - strand, within EX28DRAFT_4168at 151.703 kb on - strand, within EX28DRAFT_4168at 151.703 kb on - strand, within EX28DRAFT_4168at 151.728 kb on - strand, within EX28DRAFT_4168at 151.728 kb on - strand, within EX28DRAFT_4168at 151.754 kb on + strand, within EX28DRAFT_4168at 151.754 kb on + strand, within EX28DRAFT_4168at 151.803 kb on + strand, within EX28DRAFT_4168at 151.804 kb on - strand, within EX28DRAFT_4168at 151.887 kb on + strand, within EX28DRAFT_4168at 151.891 kb on + strand, within EX28DRAFT_4168at 151.891 kb on + strand, within EX28DRAFT_4168at 151.892 kb on - strand, within EX28DRAFT_4168at 151.921 kb on + strand, within EX28DRAFT_4168at 151.934 kb on - strand, within EX28DRAFT_4168at 151.942 kb on + strand, within EX28DRAFT_4168at 151.942 kb on + strand, within EX28DRAFT_4168at 152.007 kb on + strandat 152.010 kb on + strandat 152.042 kb on + strandat 152.043 kb on - strandat 152.044 kb on + strandat 152.064 kb on + strandat 152.064 kb on + strandat 152.065 kb on - strandat 152.065 kb on - strandat 152.076 kb on + strandat 152.076 kb on + strandat 152.098 kb on - strandat 152.218 kb on + strandat 152.219 kb on - strandat 152.227 kb on + strandat 152.240 kb on + strandat 152.254 kb on + strandat 152.254 kb on + strandat 152.255 kb on - strandat 152.278 kb on + strandat 152.278 kb on + strandat 152.300 kb on - strandat 152.300 kb on - strandat 152.300 kb on - strandat 152.303 kb on + strandat 152.303 kb on + strandat 152.304 kb on - strandat 152.304 kb on - strandat 152.304 kb on - strandat 152.304 kb on - strandat 152.444 kb on - strand, within EX28DRAFT_4169at 152.486 kb on + strand, within EX28DRAFT_4169at 152.487 kb on - strand, within EX28DRAFT_4169at 152.847 kb on + strandat 152.879 kb on - strandat 152.892 kb on - strandat 152.913 kb on + strandat 152.992 kb on + strandat 153.061 kb on + strand, within EX28DRAFT_4170at 153.061 kb on + strand, within EX28DRAFT_4170at 153.062 kb on - strand, within EX28DRAFT_4170at 153.293 kb on - strand, within EX28DRAFT_4170at 153.653 kb on - strand, within EX28DRAFT_4170at 153.654 kb on + strand, within EX28DRAFT_4170at 153.654 kb on + strand, within EX28DRAFT_4170at 153.655 kb on - strand, within EX28DRAFT_4170at 153.655 kb on - strand, within EX28DRAFT_4170at 153.661 kb on + strand, within EX28DRAFT_4170at 153.835 kb on - strand, within EX28DRAFT_4170at 153.835 kb on - strand, within EX28DRAFT_4170

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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151,282 + EX28DRAFT_4168 0.69 -0.4
151,282 + EX28DRAFT_4168 0.69 +0.2
151,282 + EX28DRAFT_4168 0.69 +0.0
151,282 + EX28DRAFT_4168 0.69 -0.2
151,282 + EX28DRAFT_4168 0.69 -0.7
151,288 + EX28DRAFT_4168 0.69 -0.1
151,289 - EX28DRAFT_4168 0.69 -0.3
151,303 - EX28DRAFT_4168 0.69 -3.9
151,507 + EX28DRAFT_4168 0.76 -0.7
151,660 + EX28DRAFT_4168 0.81 -2.9
151,660 + EX28DRAFT_4168 0.81 +1.5
151,661 - EX28DRAFT_4168 0.81 +2.2
151,703 - EX28DRAFT_4168 0.82 -3.3
151,703 - EX28DRAFT_4168 0.82 -0.2
151,728 - EX28DRAFT_4168 0.83 -0.3
151,728 - EX28DRAFT_4168 0.83 -0.0
151,754 + EX28DRAFT_4168 0.84 -4.5
151,754 + EX28DRAFT_4168 0.84 +0.5
151,803 + EX28DRAFT_4168 0.85 -0.1
151,804 - EX28DRAFT_4168 0.85 +0.2
151,887 + EX28DRAFT_4168 0.88 -0.3
151,891 + EX28DRAFT_4168 0.88 +1.0
151,891 + EX28DRAFT_4168 0.88 -0.2
151,892 - EX28DRAFT_4168 0.88 -1.9
151,921 + EX28DRAFT_4168 0.89 -2.8
151,934 - EX28DRAFT_4168 0.90 -0.6
151,942 + EX28DRAFT_4168 0.90 +1.0
151,942 + EX28DRAFT_4168 0.90 +0.2
152,007 + +0.8
152,010 + +0.6
152,042 + -0.1
152,043 - +0.8
152,044 + -1.0
152,064 + +0.6
152,064 + +0.3
152,065 - +0.3
152,065 - -2.9
152,076 + -0.1
152,076 + +0.1
152,098 - -2.2
152,218 + +0.0
152,219 - -0.6
152,227 + -0.5
152,240 + +0.4
152,254 + -1.0
152,254 + +0.4
152,255 - +0.4
152,278 + +0.3
152,278 + +0.8
152,300 - -0.2
152,300 - -1.1
152,300 - +0.7
152,303 + -1.4
152,303 + -0.4
152,304 - -0.5
152,304 - -0.8
152,304 - +1.7
152,304 - +0.1
152,444 - EX28DRAFT_4169 0.29 +1.7
152,486 + EX28DRAFT_4169 0.36 +0.3
152,487 - EX28DRAFT_4169 0.36 +0.6
152,847 + -1.2
152,879 - -0.7
152,892 - -1.5
152,913 + +1.1
152,992 + +0.2
153,061 + EX28DRAFT_4170 0.11 -1.8
153,061 + EX28DRAFT_4170 0.11 -0.8
153,062 - EX28DRAFT_4170 0.11 -1.7
153,293 - EX28DRAFT_4170 0.30 -2.3
153,653 - EX28DRAFT_4170 0.59 -2.3
153,654 + EX28DRAFT_4170 0.59 -1.2
153,654 + EX28DRAFT_4170 0.59 -0.9
153,655 - EX28DRAFT_4170 0.59 +0.4
153,655 - EX28DRAFT_4170 0.59 -4.3
153,661 + EX28DRAFT_4170 0.60 -0.5
153,835 - EX28DRAFT_4170 0.74 +0.0
153,835 - EX28DRAFT_4170 0.74 -4.8

Or see this region's nucleotide sequence