Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4077 and EX28DRAFT_4078 are separated by 329 nucleotides EX28DRAFT_4078 and EX28DRAFT_4079 are separated by 5 nucleotides EX28DRAFT_4079 and EX28DRAFT_4080 are separated by 32 nucleotides
EX28DRAFT_4077: EX28DRAFT_4077 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 52,230 to 52,892
_4077
EX28DRAFT_4078: EX28DRAFT_4078 - NlpC/P60 family, at 53,222 to 53,659
_4078
EX28DRAFT_4079: EX28DRAFT_4079 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 53,665 to 54,459
_4079
EX28DRAFT_4080: EX28DRAFT_4080 - Transcriptional regulator, at 54,492 to 55,373
_4080
Position (kb) 53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 52.413 kb on - strand, within EX28DRAFT_4077 at 52.799 kb on + strand, within EX28DRAFT_4077 at 52.892 kb on + strand at 52.904 kb on - strand at 52.933 kb on + strand at 52.942 kb on + strand at 52.943 kb on - strand at 52.943 kb on - strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.958 kb on - strand at 52.960 kb on - strand at 52.960 kb on - strand at 53.046 kb on + strand at 53.069 kb on + strand at 53.073 kb on + strand at 53.117 kb on + strand at 53.117 kb on + strand at 53.117 kb on + strand at 53.117 kb on + strand at 53.132 kb on - strand at 53.140 kb on + strand at 53.140 kb on + strand at 53.141 kb on - strand at 53.351 kb on - strand, within EX28DRAFT_4078 at 53.534 kb on + strand, within EX28DRAFT_4078 at 53.534 kb on + strand, within EX28DRAFT_4078 at 53.534 kb on + strand, within EX28DRAFT_4078 at 53.535 kb on - strand, within EX28DRAFT_4078 at 53.535 kb on - strand, within EX28DRAFT_4078 at 53.535 kb on - strand, within EX28DRAFT_4078 at 53.537 kb on - strand, within EX28DRAFT_4078 at 53.554 kb on + strand, within EX28DRAFT_4078 at 53.554 kb on + strand, within EX28DRAFT_4078 at 53.555 kb on - strand, within EX28DRAFT_4078 at 53.621 kb on + strand at 53.621 kb on + strand at 53.621 kb on + strand at 53.621 kb on + strand at 53.621 kb on + strand at 53.622 kb on - strand at 53.622 kb on - strand at 53.622 kb on - strand at 53.671 kb on - strand at 53.744 kb on + strand at 53.745 kb on - strand, within EX28DRAFT_4079 at 53.745 kb on - strand, within EX28DRAFT_4079 at 53.745 kb on - strand, within EX28DRAFT_4079 at 53.755 kb on - strand, within EX28DRAFT_4079 at 54.010 kb on - strand, within EX28DRAFT_4079 at 54.022 kb on - strand, within EX28DRAFT_4079 at 54.079 kb on - strand, within EX28DRAFT_4079 at 54.164 kb on + strand, within EX28DRAFT_4079 at 54.164 kb on + strand, within EX28DRAFT_4079 at 54.165 kb on - strand, within EX28DRAFT_4079 at 54.182 kb on + strand, within EX28DRAFT_4079 at 54.287 kb on - strand, within EX28DRAFT_4079 at 54.581 kb on + strand, within EX28DRAFT_4080
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 52,413 - EX28DRAFT_4077 0.28 -2.8 52,799 + EX28DRAFT_4077 0.86 -0.5 52,892 + -1.5 52,904 - +0.8 52,933 + +0.5 52,942 + +0.2 52,943 - -0.6 52,943 - +0.7 52,957 + +1.3 52,957 + +1.2 52,958 - +0.8 52,960 - -1.4 52,960 - -1.6 53,046 + -0.1 53,069 + -2.8 53,073 + +0.1 53,117 + -0.3 53,117 + +0.2 53,117 + +0.1 53,117 + -0.5 53,132 - -0.1 53,140 + -0.3 53,140 + +0.3 53,141 - -1.1 53,351 - EX28DRAFT_4078 0.29 +0.6 53,534 + EX28DRAFT_4078 0.71 +0.2 53,534 + EX28DRAFT_4078 0.71 +0.3 53,534 + EX28DRAFT_4078 0.71 +1.4 53,535 - EX28DRAFT_4078 0.71 -0.5 53,535 - EX28DRAFT_4078 0.71 -1.2 53,535 - EX28DRAFT_4078 0.71 +0.4 53,537 - EX28DRAFT_4078 0.72 -1.0 53,554 + EX28DRAFT_4078 0.76 -1.6 53,554 + EX28DRAFT_4078 0.76 -0.4 53,555 - EX28DRAFT_4078 0.76 -0.1 53,621 + -0.6 53,621 + -2.6 53,621 + -0.9 53,621 + -0.6 53,621 + -0.1 53,622 - +0.3 53,622 - +0.8 53,622 - -1.7 53,671 - -1.4 53,744 + -0.1 53,745 - EX28DRAFT_4079 0.10 +0.2 53,745 - EX28DRAFT_4079 0.10 +0.3 53,745 - EX28DRAFT_4079 0.10 -0.3 53,755 - EX28DRAFT_4079 0.11 +0.1 54,010 - EX28DRAFT_4079 0.43 -1.2 54,022 - EX28DRAFT_4079 0.45 +1.0 54,079 - EX28DRAFT_4079 0.52 +0.0 54,164 + EX28DRAFT_4079 0.63 +0.6 54,164 + EX28DRAFT_4079 0.63 -0.1 54,165 - EX28DRAFT_4079 0.63 +0.2 54,182 + EX28DRAFT_4079 0.65 -3.6 54,287 - EX28DRAFT_4079 0.78 -1.5 54,581 + EX28DRAFT_4080 0.10 -1.9
Or see this region's nucleotide sequence