Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3876

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3874 and EX28DRAFT_3875 are separated by 5 nucleotidesEX28DRAFT_3875 and EX28DRAFT_3876 overlap by 13 nucleotidesEX28DRAFT_3876 and EX28DRAFT_3877 are separated by 24 nucleotides EX28DRAFT_3874: EX28DRAFT_3874 - ADP-heptose:LPS heptosyltransferase, at 83,957 to 85,066 _3874 EX28DRAFT_3875: EX28DRAFT_3875 - Glycosyltransferases involved in cell wall biogenesis, at 85,072 to 85,980 _3875 EX28DRAFT_3876: EX28DRAFT_3876 - Lipid A core - O-antigen ligase and related enzymes, at 85,968 to 87,182 _3876 EX28DRAFT_3877: EX28DRAFT_3877 - hypothetical protein, at 87,207 to 88,217 _3877 Position (kb) 85 86 87 88Strain fitness (log2 ratio) -2 -1 0 1 2 3at 85.017 kb on + strandat 85.040 kb on + strandat 85.041 kb on - strandat 85.041 kb on - strandat 85.069 kb on - strandat 85.069 kb on - strandat 85.083 kb on + strandat 85.084 kb on - strandat 85.084 kb on - strandat 85.116 kb on + strandat 85.128 kb on + strandat 85.133 kb on + strandat 85.175 kb on + strand, within EX28DRAFT_3875at 85.175 kb on + strand, within EX28DRAFT_3875at 85.175 kb on + strand, within EX28DRAFT_3875at 85.175 kb on + strand, within EX28DRAFT_3875at 85.176 kb on - strand, within EX28DRAFT_3875at 85.176 kb on - strand, within EX28DRAFT_3875at 85.185 kb on + strand, within EX28DRAFT_3875at 85.221 kb on + strand, within EX28DRAFT_3875at 85.221 kb on + strand, within EX28DRAFT_3875at 85.222 kb on - strand, within EX28DRAFT_3875at 85.222 kb on - strand, within EX28DRAFT_3875at 85.224 kb on + strand, within EX28DRAFT_3875at 85.286 kb on + strand, within EX28DRAFT_3875at 85.286 kb on + strand, within EX28DRAFT_3875at 85.287 kb on - strand, within EX28DRAFT_3875at 85.287 kb on - strand, within EX28DRAFT_3875at 85.287 kb on - strand, within EX28DRAFT_3875at 85.287 kb on - strand, within EX28DRAFT_3875at 85.330 kb on + strand, within EX28DRAFT_3875at 85.330 kb on + strand, within EX28DRAFT_3875at 85.330 kb on + strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.335 kb on + strand, within EX28DRAFT_3875at 85.335 kb on + strand, within EX28DRAFT_3875at 85.335 kb on + strand, within EX28DRAFT_3875at 85.336 kb on - strand, within EX28DRAFT_3875at 85.376 kb on + strand, within EX28DRAFT_3875at 85.377 kb on - strand, within EX28DRAFT_3875at 85.417 kb on - strand, within EX28DRAFT_3875at 85.417 kb on - strand, within EX28DRAFT_3875at 85.461 kb on + strand, within EX28DRAFT_3875at 85.504 kb on + strand, within EX28DRAFT_3875at 85.505 kb on - strand, within EX28DRAFT_3875at 85.514 kb on + strand, within EX28DRAFT_3875at 85.566 kb on + strand, within EX28DRAFT_3875at 85.583 kb on - strand, within EX28DRAFT_3875at 85.586 kb on + strand, within EX28DRAFT_3875at 85.587 kb on - strand, within EX28DRAFT_3875at 85.587 kb on - strand, within EX28DRAFT_3875at 85.664 kb on + strand, within EX28DRAFT_3875at 85.665 kb on - strand, within EX28DRAFT_3875at 85.687 kb on + strand, within EX28DRAFT_3875at 85.690 kb on + strand, within EX28DRAFT_3875at 85.691 kb on - strand, within EX28DRAFT_3875at 85.694 kb on - strand, within EX28DRAFT_3875at 85.694 kb on - strand, within EX28DRAFT_3875at 85.694 kb on - strand, within EX28DRAFT_3875at 85.694 kb on - strand, within EX28DRAFT_3875at 85.900 kb on + strandat 85.931 kb on + strandat 85.932 kb on - strandat 86.071 kb on - strandat 86.164 kb on + strand, within EX28DRAFT_3876at 86.164 kb on + strand, within EX28DRAFT_3876at 86.196 kb on + strand, within EX28DRAFT_3876at 86.317 kb on - strand, within EX28DRAFT_3876at 86.338 kb on + strand, within EX28DRAFT_3876at 86.365 kb on + strand, within EX28DRAFT_3876at 86.376 kb on + strand, within EX28DRAFT_3876at 86.376 kb on + strand, within EX28DRAFT_3876at 86.377 kb on - strand, within EX28DRAFT_3876at 86.412 kb on - strand, within EX28DRAFT_3876at 86.478 kb on - strand, within EX28DRAFT_3876at 86.479 kb on + strand, within EX28DRAFT_3876at 86.479 kb on + strand, within EX28DRAFT_3876at 86.480 kb on - strand, within EX28DRAFT_3876at 86.507 kb on + strand, within EX28DRAFT_3876at 86.558 kb on - strand, within EX28DRAFT_3876at 86.669 kb on + strand, within EX28DRAFT_3876at 86.723 kb on - strand, within EX28DRAFT_3876at 86.752 kb on - strand, within EX28DRAFT_3876at 86.862 kb on - strand, within EX28DRAFT_3876at 86.924 kb on - strand, within EX28DRAFT_3876at 87.007 kb on + strand, within EX28DRAFT_3876at 87.098 kb on - strandat 87.100 kb on + strandat 87.180 kb on + strandat 87.209 kb on - strandat 87.226 kb on + strandat 87.285 kb on + strandat 87.330 kb on - strand, within EX28DRAFT_3877at 87.368 kb on + strand, within EX28DRAFT_3877at 87.369 kb on - strand, within EX28DRAFT_3877at 87.369 kb on - strand, within EX28DRAFT_3877at 87.379 kb on + strand, within EX28DRAFT_3877at 87.380 kb on - strand, within EX28DRAFT_3877at 87.380 kb on - strand, within EX28DRAFT_3877at 87.380 kb on - strand, within EX28DRAFT_3877at 87.380 kb on - strand, within EX28DRAFT_3877at 87.475 kb on + strand, within EX28DRAFT_3877at 87.475 kb on + strand, within EX28DRAFT_3877at 87.476 kb on - strand, within EX28DRAFT_3877at 87.480 kb on - strand, within EX28DRAFT_3877at 87.533 kb on + strand, within EX28DRAFT_3877at 87.534 kb on - strand, within EX28DRAFT_3877at 87.534 kb on - strand, within EX28DRAFT_3877at 87.534 kb on - strand, within EX28DRAFT_3877at 87.534 kb on - strand, within EX28DRAFT_3877at 87.536 kb on - strand, within EX28DRAFT_3877at 87.631 kb on + strand, within EX28DRAFT_3877at 87.866 kb on - strand, within EX28DRAFT_3877at 87.866 kb on - strand, within EX28DRAFT_3877at 87.866 kb on - strand, within EX28DRAFT_3877at 87.866 kb on - strand, within EX28DRAFT_3877at 87.914 kb on + strand, within EX28DRAFT_3877at 88.010 kb on - strand, within EX28DRAFT_3877at 88.032 kb on - strand, within EX28DRAFT_3877at 88.091 kb on + strand, within EX28DRAFT_3877at 88.131 kb on - strandat 88.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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85,017 + +0.3
85,040 + -1.7
85,041 - +0.2
85,041 - +1.1
85,069 - +0.7
85,069 - +0.9
85,083 + +1.3
85,084 - +0.8
85,084 - +0.4
85,116 + +0.7
85,128 + +2.4
85,133 + +0.4
85,175 + EX28DRAFT_3875 0.11 +1.3
85,175 + EX28DRAFT_3875 0.11 +0.8
85,175 + EX28DRAFT_3875 0.11 +1.5
85,175 + EX28DRAFT_3875 0.11 +0.8
85,176 - EX28DRAFT_3875 0.11 -0.3
85,176 - EX28DRAFT_3875 0.11 +0.6
85,185 + EX28DRAFT_3875 0.12 -1.7
85,221 + EX28DRAFT_3875 0.16 +1.1
85,221 + EX28DRAFT_3875 0.16 +0.7
85,222 - EX28DRAFT_3875 0.17 +1.2
85,222 - EX28DRAFT_3875 0.17 +1.6
85,224 + EX28DRAFT_3875 0.17 +1.3
85,286 + EX28DRAFT_3875 0.24 +0.8
85,286 + EX28DRAFT_3875 0.24 +1.7
85,287 - EX28DRAFT_3875 0.24 +1.3
85,287 - EX28DRAFT_3875 0.24 +0.3
85,287 - EX28DRAFT_3875 0.24 +0.9
85,287 - EX28DRAFT_3875 0.24 +0.8
85,330 + EX28DRAFT_3875 0.28 +1.2
85,330 + EX28DRAFT_3875 0.28 +1.0
85,330 + EX28DRAFT_3875 0.28 +1.0
85,331 - EX28DRAFT_3875 0.28 -1.5
85,331 - EX28DRAFT_3875 0.28 +0.4
85,331 - EX28DRAFT_3875 0.28 +0.2
85,331 - EX28DRAFT_3875 0.28 +1.0
85,331 - EX28DRAFT_3875 0.28 +0.5
85,335 + EX28DRAFT_3875 0.29 +0.9
85,335 + EX28DRAFT_3875 0.29 +2.4
85,335 + EX28DRAFT_3875 0.29 +1.0
85,336 - EX28DRAFT_3875 0.29 +1.6
85,376 + EX28DRAFT_3875 0.33 +1.9
85,377 - EX28DRAFT_3875 0.34 -1.8
85,417 - EX28DRAFT_3875 0.38 +1.2
85,417 - EX28DRAFT_3875 0.38 +0.9
85,461 + EX28DRAFT_3875 0.43 +1.5
85,504 + EX28DRAFT_3875 0.48 +0.6
85,505 - EX28DRAFT_3875 0.48 +1.0
85,514 + EX28DRAFT_3875 0.49 +1.6
85,566 + EX28DRAFT_3875 0.54 +1.1
85,583 - EX28DRAFT_3875 0.56 -1.0
85,586 + EX28DRAFT_3875 0.57 +0.1
85,587 - EX28DRAFT_3875 0.57 +2.0
85,587 - EX28DRAFT_3875 0.57 +0.9
85,664 + EX28DRAFT_3875 0.65 +0.4
85,665 - EX28DRAFT_3875 0.65 +0.4
85,687 + EX28DRAFT_3875 0.68 +0.8
85,690 + EX28DRAFT_3875 0.68 +1.1
85,691 - EX28DRAFT_3875 0.68 +0.8
85,694 - EX28DRAFT_3875 0.68 +1.3
85,694 - EX28DRAFT_3875 0.68 -1.4
85,694 - EX28DRAFT_3875 0.68 +0.6
85,694 - EX28DRAFT_3875 0.68 +0.6
85,900 + +0.5
85,931 + +1.1
85,932 - +0.3
86,071 - +1.0
86,164 + EX28DRAFT_3876 0.16 +0.6
86,164 + EX28DRAFT_3876 0.16 +1.0
86,196 + EX28DRAFT_3876 0.19 +1.2
86,317 - EX28DRAFT_3876 0.29 +0.8
86,338 + EX28DRAFT_3876 0.30 -0.3
86,365 + EX28DRAFT_3876 0.33 +0.9
86,376 + EX28DRAFT_3876 0.34 +0.5
86,376 + EX28DRAFT_3876 0.34 +0.8
86,377 - EX28DRAFT_3876 0.34 +1.1
86,412 - EX28DRAFT_3876 0.37 +1.1
86,478 - EX28DRAFT_3876 0.42 +0.4
86,479 + EX28DRAFT_3876 0.42 +1.8
86,479 + EX28DRAFT_3876 0.42 +0.7
86,480 - EX28DRAFT_3876 0.42 +0.6
86,507 + EX28DRAFT_3876 0.44 +0.9
86,558 - EX28DRAFT_3876 0.49 +1.8
86,669 + EX28DRAFT_3876 0.58 +0.6
86,723 - EX28DRAFT_3876 0.62 +0.4
86,752 - EX28DRAFT_3876 0.65 +1.8
86,862 - EX28DRAFT_3876 0.74 +0.7
86,924 - EX28DRAFT_3876 0.79 -0.1
87,007 + EX28DRAFT_3876 0.86 +1.0
87,098 - +0.8
87,100 + +1.6
87,180 + -0.3
87,209 - -1.9
87,226 + +1.5
87,285 + +0.5
87,330 - EX28DRAFT_3877 0.12 +0.1
87,368 + EX28DRAFT_3877 0.16 +1.0
87,369 - EX28DRAFT_3877 0.16 +1.0
87,369 - EX28DRAFT_3877 0.16 +1.4
87,379 + EX28DRAFT_3877 0.17 +0.7
87,380 - EX28DRAFT_3877 0.17 +0.7
87,380 - EX28DRAFT_3877 0.17 +0.6
87,380 - EX28DRAFT_3877 0.17 +1.8
87,380 - EX28DRAFT_3877 0.17 +2.7
87,475 + EX28DRAFT_3877 0.27 +1.5
87,475 + EX28DRAFT_3877 0.27 +0.9
87,476 - EX28DRAFT_3877 0.27 +1.7
87,480 - EX28DRAFT_3877 0.27 +0.6
87,533 + EX28DRAFT_3877 0.32 +0.8
87,534 - EX28DRAFT_3877 0.32 +1.0
87,534 - EX28DRAFT_3877 0.32 +1.7
87,534 - EX28DRAFT_3877 0.32 +0.4
87,534 - EX28DRAFT_3877 0.32 +0.8
87,536 - EX28DRAFT_3877 0.33 +0.8
87,631 + EX28DRAFT_3877 0.42 +2.0
87,866 - EX28DRAFT_3877 0.65 -0.0
87,866 - EX28DRAFT_3877 0.65 +1.2
87,866 - EX28DRAFT_3877 0.65 +1.8
87,866 - EX28DRAFT_3877 0.65 +0.0
87,914 + EX28DRAFT_3877 0.70 +0.2
88,010 - EX28DRAFT_3877 0.79 +0.8
88,032 - EX28DRAFT_3877 0.82 +3.2
88,091 + EX28DRAFT_3877 0.87 +1.5
88,131 - +1.0
88,145 + -1.5

Or see this region's nucleotide sequence