Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3200

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3198 and EX28DRAFT_3199 are separated by 9 nucleotidesEX28DRAFT_3199 and EX28DRAFT_3200 are separated by 67 nucleotidesEX28DRAFT_3200 and EX28DRAFT_3201 are separated by 41 nucleotidesEX28DRAFT_3201 and EX28DRAFT_3202 are separated by 128 nucleotides EX28DRAFT_3198: EX28DRAFT_3198 - Phosphoheptose isomerase, at 499,863 to 500,453 _3198 EX28DRAFT_3199: EX28DRAFT_3199 - Predicted periplasmic or secreted lipoprotein, at 500,463 to 501,038 _3199 EX28DRAFT_3200: EX28DRAFT_3200 - Predicted permeases, at 501,106 to 502,143 _3200 EX28DRAFT_3201: EX28DRAFT_3201 - Predicted nucleoside-diphosphate-sugar epimerases, at 502,185 to 502,829 _3201 EX28DRAFT_3202: EX28DRAFT_3202 - intracellular protease, PfpI family, at 502,958 to 503,476 _3202 Position (kb) 501 502 503Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 500.387 kb on + strand, within EX28DRAFT_3198at 500.387 kb on + strand, within EX28DRAFT_3198at 500.387 kb on + strand, within EX28DRAFT_3198at 500.387 kb on + strand, within EX28DRAFT_3198at 500.387 kb on + strand, within EX28DRAFT_3198at 500.387 kb on + strand, within EX28DRAFT_3198at 500.388 kb on - strand, within EX28DRAFT_3198at 500.388 kb on - strand, within EX28DRAFT_3198at 500.452 kb on - strandat 500.462 kb on + strandat 500.492 kb on + strandat 500.492 kb on + strandat 500.492 kb on + strandat 500.493 kb on - strandat 500.519 kb on + strandat 500.520 kb on - strandat 500.520 kb on - strandat 500.686 kb on - strand, within EX28DRAFT_3199at 500.794 kb on + strand, within EX28DRAFT_3199at 500.794 kb on + strand, within EX28DRAFT_3199at 500.794 kb on + strand, within EX28DRAFT_3199at 501.024 kb on - strandat 501.027 kb on + strandat 501.027 kb on + strandat 501.027 kb on + strandat 501.027 kb on + strandat 501.027 kb on + strandat 501.028 kb on - strandat 501.028 kb on - strandat 501.117 kb on + strandat 501.117 kb on + strandat 501.118 kb on - strandat 501.121 kb on - strandat 501.121 kb on - strandat 501.193 kb on - strandat 501.193 kb on - strandat 501.193 kb on - strandat 501.205 kb on - strandat 501.205 kb on - strandat 501.235 kb on - strand, within EX28DRAFT_3200at 501.440 kb on + strand, within EX28DRAFT_3200at 501.440 kb on + strand, within EX28DRAFT_3200at 501.440 kb on + strand, within EX28DRAFT_3200at 501.441 kb on - strand, within EX28DRAFT_3200at 501.441 kb on - strand, within EX28DRAFT_3200at 501.441 kb on - strand, within EX28DRAFT_3200at 501.441 kb on - strand, within EX28DRAFT_3200at 501.654 kb on + strand, within EX28DRAFT_3200at 501.862 kb on - strand, within EX28DRAFT_3200at 501.984 kb on + strand, within EX28DRAFT_3200at 502.031 kb on + strand, within EX28DRAFT_3200at 502.143 kb on + strandat 502.144 kb on - strandat 502.144 kb on - strandat 502.160 kb on + strandat 502.160 kb on + strandat 502.161 kb on - strandat 502.163 kb on + strandat 502.163 kb on + strandat 502.163 kb on + strandat 502.163 kb on + strandat 502.163 kb on + strandat 502.163 kb on + strandat 502.163 kb on + strandat 502.164 kb on - strandat 502.164 kb on - strandat 502.164 kb on - strandat 502.164 kb on - strandat 502.164 kb on - strandat 502.168 kb on + strandat 502.230 kb on - strandat 502.566 kb on - strand, within EX28DRAFT_3201at 502.568 kb on - strand, within EX28DRAFT_3201at 502.581 kb on - strand, within EX28DRAFT_3201at 502.744 kb on + strand, within EX28DRAFT_3201at 502.744 kb on + strand, within EX28DRAFT_3201at 502.745 kb on - strand, within EX28DRAFT_3201at 502.745 kb on - strand, within EX28DRAFT_3201at 502.745 kb on - strand, within EX28DRAFT_3201at 502.745 kb on - strand, within EX28DRAFT_3201at 502.745 kb on - strand, within EX28DRAFT_3201at 502.745 kb on - strand, within EX28DRAFT_3201at 502.745 kb on - strand, within EX28DRAFT_3201at 502.812 kb on - strandat 502.885 kb on - strandat 502.885 kb on - strandat 502.885 kb on - strandat 502.885 kb on - strandat 502.885 kb on - strandat 502.885 kb on - strandat 502.895 kb on + strandat 502.895 kb on + strandat 502.896 kb on - strandat 502.901 kb on + strandat 502.901 kb on + strandat 502.905 kb on + strandat 502.905 kb on + strandat 502.905 kb on + strandat 502.905 kb on + strandat 502.906 kb on - strandat 502.906 kb on - strandat 502.906 kb on - strandat 502.909 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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500,387 + EX28DRAFT_3198 0.89 +1.0
500,387 + EX28DRAFT_3198 0.89 -1.5
500,387 + EX28DRAFT_3198 0.89 +0.6
500,387 + EX28DRAFT_3198 0.89 +0.4
500,387 + EX28DRAFT_3198 0.89 +0.4
500,387 + EX28DRAFT_3198 0.89 -3.5
500,388 - EX28DRAFT_3198 0.89 -2.5
500,388 - EX28DRAFT_3198 0.89 +0.8
500,452 - +1.0
500,462 + +0.0
500,492 + -0.3
500,492 + +0.3
500,492 + +1.5
500,493 - +0.7
500,519 + -0.7
500,520 - -0.3
500,520 - -0.1
500,686 - EX28DRAFT_3199 0.39 +0.4
500,794 + EX28DRAFT_3199 0.57 +0.8
500,794 + EX28DRAFT_3199 0.57 +0.2
500,794 + EX28DRAFT_3199 0.57 +0.2
501,024 - +0.3
501,027 + +1.0
501,027 + +1.4
501,027 + +2.0
501,027 + -0.7
501,027 + +0.2
501,028 - +0.4
501,028 - +0.5
501,117 + +0.4
501,117 + -0.1
501,118 - -0.9
501,121 - -0.1
501,121 - +0.8
501,193 - -0.2
501,193 - -0.4
501,193 - +0.3
501,205 - +0.4
501,205 - -0.8
501,235 - EX28DRAFT_3200 0.12 +0.7
501,440 + EX28DRAFT_3200 0.32 +0.6
501,440 + EX28DRAFT_3200 0.32 -1.3
501,440 + EX28DRAFT_3200 0.32 +0.1
501,441 - EX28DRAFT_3200 0.32 +0.4
501,441 - EX28DRAFT_3200 0.32 -0.0
501,441 - EX28DRAFT_3200 0.32 -3.9
501,441 - EX28DRAFT_3200 0.32 +0.2
501,654 + EX28DRAFT_3200 0.53 +0.6
501,862 - EX28DRAFT_3200 0.73 +0.5
501,984 + EX28DRAFT_3200 0.85 +0.5
502,031 + EX28DRAFT_3200 0.89 +0.6
502,143 + +0.5
502,144 - +0.9
502,144 - -0.7
502,160 + -1.3
502,160 + -0.1
502,161 - +0.2
502,163 + -0.1
502,163 + -0.3
502,163 + +0.0
502,163 + +0.7
502,163 + -0.2
502,163 + -1.0
502,163 + +0.3
502,164 - +1.3
502,164 - +2.1
502,164 - +0.1
502,164 - -2.0
502,164 - +1.9
502,168 + -0.6
502,230 - +0.5
502,566 - EX28DRAFT_3201 0.59 -1.7
502,568 - EX28DRAFT_3201 0.59 +1.0
502,581 - EX28DRAFT_3201 0.61 +0.7
502,744 + EX28DRAFT_3201 0.87 -0.2
502,744 + EX28DRAFT_3201 0.87 -3.1
502,745 - EX28DRAFT_3201 0.87 -1.4
502,745 - EX28DRAFT_3201 0.87 -0.8
502,745 - EX28DRAFT_3201 0.87 -2.7
502,745 - EX28DRAFT_3201 0.87 +2.5
502,745 - EX28DRAFT_3201 0.87 +0.0
502,745 - EX28DRAFT_3201 0.87 -3.5
502,745 - EX28DRAFT_3201 0.87 +0.5
502,812 - -1.7
502,885 - +0.0
502,885 - -2.4
502,885 - -0.3
502,885 - +1.0
502,885 - -0.3
502,885 - -2.0
502,895 + -0.7
502,895 + +0.8
502,896 - +0.5
502,901 + +0.4
502,901 + -0.6
502,905 + +1.8
502,905 + -1.3
502,905 + +0.2
502,905 + -2.0
502,906 - +0.6
502,906 - -0.2
502,906 - -0.7
502,909 + +0.5

Or see this region's nucleotide sequence