Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3194

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3192 and EX28DRAFT_3193 are separated by 12 nucleotidesEX28DRAFT_3193 and EX28DRAFT_3194 are separated by 20 nucleotidesEX28DRAFT_3194 and EX28DRAFT_3195 are separated by 67 nucleotidesEX28DRAFT_3195 and EX28DRAFT_3196 are separated by 62 nucleotides EX28DRAFT_3192: EX28DRAFT_3192 - putative sugar isomerase, AgaS family, at 492,389 to 493,537 _3192 EX28DRAFT_3193: EX28DRAFT_3193 - class II aldolase, tagatose bisphosphate family, at 493,550 to 494,422 _3193 EX28DRAFT_3194: EX28DRAFT_3194 - hypothetical protein, at 494,443 to 496,332 _3194 EX28DRAFT_3195: EX28DRAFT_3195 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 496,400 to 497,263 _3195 EX28DRAFT_3196: EX28DRAFT_3196 - LppC putative lipoprotein, at 497,326 to 499,488 _3196 Position (kb) 494 495 496 497Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 493.452 kb on + strandat 493.459 kb on + strandat 493.535 kb on + strandat 493.549 kb on + strandat 493.550 kb on - strandat 493.550 kb on - strandat 493.555 kb on + strandat 493.555 kb on + strandat 493.555 kb on + strandat 493.556 kb on - strandat 493.558 kb on + strandat 493.558 kb on + strandat 493.559 kb on - strandat 493.571 kb on + strandat 493.572 kb on - strandat 493.572 kb on - strandat 493.712 kb on - strand, within EX28DRAFT_3193at 493.718 kb on - strand, within EX28DRAFT_3193at 493.718 kb on - strand, within EX28DRAFT_3193at 493.736 kb on + strand, within EX28DRAFT_3193at 493.736 kb on + strand, within EX28DRAFT_3193at 493.736 kb on + strand, within EX28DRAFT_3193at 494.099 kb on - strand, within EX28DRAFT_3193at 494.324 kb on + strand, within EX28DRAFT_3193at 494.324 kb on + strand, within EX28DRAFT_3193at 494.324 kb on + strand, within EX28DRAFT_3193at 494.324 kb on + strand, within EX28DRAFT_3193at 494.324 kb on + strand, within EX28DRAFT_3193at 494.325 kb on - strand, within EX28DRAFT_3193at 494.325 kb on - strand, within EX28DRAFT_3193at 494.325 kb on - strand, within EX28DRAFT_3193at 494.436 kb on + strandat 494.436 kb on + strandat 494.529 kb on + strandat 494.530 kb on - strandat 494.587 kb on - strandat 494.729 kb on + strand, within EX28DRAFT_3194at 494.761 kb on + strand, within EX28DRAFT_3194at 494.761 kb on + strand, within EX28DRAFT_3194at 494.761 kb on + strand, within EX28DRAFT_3194at 494.761 kb on + strand, within EX28DRAFT_3194at 494.762 kb on - strand, within EX28DRAFT_3194at 494.777 kb on - strand, within EX28DRAFT_3194at 494.821 kb on - strand, within EX28DRAFT_3194at 494.857 kb on + strand, within EX28DRAFT_3194at 494.858 kb on - strand, within EX28DRAFT_3194at 494.858 kb on - strand, within EX28DRAFT_3194at 494.862 kb on - strand, within EX28DRAFT_3194at 494.938 kb on + strand, within EX28DRAFT_3194at 494.938 kb on + strand, within EX28DRAFT_3194at 494.938 kb on + strand, within EX28DRAFT_3194at 494.939 kb on - strand, within EX28DRAFT_3194at 494.939 kb on - strand, within EX28DRAFT_3194at 494.939 kb on - strand, within EX28DRAFT_3194at 494.970 kb on - strand, within EX28DRAFT_3194at 494.970 kb on - strand, within EX28DRAFT_3194at 494.970 kb on - strand, within EX28DRAFT_3194at 494.970 kb on - strand, within EX28DRAFT_3194at 495.012 kb on + strand, within EX28DRAFT_3194at 495.099 kb on + strand, within EX28DRAFT_3194at 495.099 kb on + strand, within EX28DRAFT_3194at 495.100 kb on - strand, within EX28DRAFT_3194at 495.100 kb on - strand, within EX28DRAFT_3194at 495.106 kb on + strand, within EX28DRAFT_3194at 495.106 kb on + strand, within EX28DRAFT_3194at 495.110 kb on + strand, within EX28DRAFT_3194at 495.111 kb on - strand, within EX28DRAFT_3194at 495.193 kb on - strand, within EX28DRAFT_3194at 495.373 kb on + strand, within EX28DRAFT_3194at 495.375 kb on + strand, within EX28DRAFT_3194at 495.376 kb on - strand, within EX28DRAFT_3194at 495.463 kb on + strand, within EX28DRAFT_3194at 495.469 kb on - strand, within EX28DRAFT_3194at 495.498 kb on - strand, within EX28DRAFT_3194at 495.516 kb on + strand, within EX28DRAFT_3194at 495.517 kb on - strand, within EX28DRAFT_3194at 495.558 kb on + strand, within EX28DRAFT_3194at 495.561 kb on + strand, within EX28DRAFT_3194at 495.642 kb on + strand, within EX28DRAFT_3194at 495.642 kb on + strand, within EX28DRAFT_3194at 495.643 kb on - strand, within EX28DRAFT_3194at 495.688 kb on + strand, within EX28DRAFT_3194at 495.689 kb on - strand, within EX28DRAFT_3194at 495.730 kb on + strand, within EX28DRAFT_3194at 495.785 kb on - strand, within EX28DRAFT_3194at 495.955 kb on + strand, within EX28DRAFT_3194at 495.955 kb on + strand, within EX28DRAFT_3194at 495.955 kb on + strand, within EX28DRAFT_3194at 495.955 kb on + strand, within EX28DRAFT_3194at 495.955 kb on + strand, within EX28DRAFT_3194at 495.955 kb on + strand, within EX28DRAFT_3194at 495.956 kb on - strand, within EX28DRAFT_3194at 495.956 kb on - strand, within EX28DRAFT_3194at 495.956 kb on - strand, within EX28DRAFT_3194at 495.956 kb on - strand, within EX28DRAFT_3194at 495.956 kb on - strand, within EX28DRAFT_3194at 495.957 kb on + strand, within EX28DRAFT_3194at 495.957 kb on + strand, within EX28DRAFT_3194at 495.957 kb on + strand, within EX28DRAFT_3194at 495.957 kb on + strand, within EX28DRAFT_3194at 495.957 kb on + strand, within EX28DRAFT_3194at 495.958 kb on - strand, within EX28DRAFT_3194at 496.160 kb on - strandat 496.163 kb on - strandat 496.173 kb on - strandat 496.232 kb on - strandat 496.232 kb on - strandat 496.240 kb on - strandat 496.263 kb on + strandat 496.282 kb on - strandat 496.326 kb on + strandat 496.326 kb on + strandat 496.342 kb on - strandat 496.425 kb on + strandat 496.429 kb on + strandat 496.429 kb on + strandat 496.430 kb on - strandat 496.430 kb on - strandat 496.430 kb on - strandat 496.431 kb on + strandat 496.432 kb on - strandat 496.558 kb on + strand, within EX28DRAFT_3195at 496.558 kb on + strand, within EX28DRAFT_3195at 496.558 kb on + strand, within EX28DRAFT_3195at 496.721 kb on - strand, within EX28DRAFT_3195at 496.721 kb on - strand, within EX28DRAFT_3195at 496.796 kb on + strand, within EX28DRAFT_3195at 496.796 kb on + strand, within EX28DRAFT_3195at 496.942 kb on + strand, within EX28DRAFT_3195at 496.942 kb on + strand, within EX28DRAFT_3195at 496.943 kb on - strand, within EX28DRAFT_3195at 497.213 kb on + strandat 497.213 kb on + strandat 497.220 kb on + strandat 497.220 kb on + strandat 497.220 kb on + strandat 497.221 kb on - strandat 497.240 kb on - strandat 497.276 kb on - strandat 497.286 kb on + strandat 497.331 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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493,452 + -0.4
493,459 + -0.2
493,535 + -1.3
493,549 + +0.1
493,550 - +1.1
493,550 - +0.4
493,555 + -0.0
493,555 + -0.1
493,555 + -2.0
493,556 - -0.4
493,558 + -0.5
493,558 + -0.7
493,559 - +0.1
493,571 + -1.1
493,572 - -2.4
493,572 - +3.1
493,712 - EX28DRAFT_3193 0.19 +1.0
493,718 - EX28DRAFT_3193 0.19 +0.3
493,718 - EX28DRAFT_3193 0.19 -0.1
493,736 + EX28DRAFT_3193 0.21 -0.2
493,736 + EX28DRAFT_3193 0.21 +0.3
493,736 + EX28DRAFT_3193 0.21 -1.2
494,099 - EX28DRAFT_3193 0.63 -1.7
494,324 + EX28DRAFT_3193 0.89 -0.4
494,324 + EX28DRAFT_3193 0.89 +1.6
494,324 + EX28DRAFT_3193 0.89 -0.1
494,324 + EX28DRAFT_3193 0.89 +0.9
494,324 + EX28DRAFT_3193 0.89 +0.3
494,325 - EX28DRAFT_3193 0.89 +2.8
494,325 - EX28DRAFT_3193 0.89 -0.5
494,325 - EX28DRAFT_3193 0.89 +0.3
494,436 + -0.5
494,436 + -1.6
494,529 + +0.3
494,530 - -1.0
494,587 - -0.0
494,729 + EX28DRAFT_3194 0.15 -1.0
494,761 + EX28DRAFT_3194 0.17 +0.3
494,761 + EX28DRAFT_3194 0.17 -0.3
494,761 + EX28DRAFT_3194 0.17 +0.1
494,761 + EX28DRAFT_3194 0.17 -0.2
494,762 - EX28DRAFT_3194 0.17 +0.5
494,777 - EX28DRAFT_3194 0.18 +0.0
494,821 - EX28DRAFT_3194 0.20 -1.7
494,857 + EX28DRAFT_3194 0.22 -0.6
494,858 - EX28DRAFT_3194 0.22 +0.4
494,858 - EX28DRAFT_3194 0.22 +0.4
494,862 - EX28DRAFT_3194 0.22 -0.1
494,938 + EX28DRAFT_3194 0.26 -0.3
494,938 + EX28DRAFT_3194 0.26 +0.1
494,938 + EX28DRAFT_3194 0.26 +0.1
494,939 - EX28DRAFT_3194 0.26 -1.0
494,939 - EX28DRAFT_3194 0.26 -2.3
494,939 - EX28DRAFT_3194 0.26 -1.6
494,970 - EX28DRAFT_3194 0.28 +0.1
494,970 - EX28DRAFT_3194 0.28 +0.1
494,970 - EX28DRAFT_3194 0.28 -0.8
494,970 - EX28DRAFT_3194 0.28 +0.2
495,012 + EX28DRAFT_3194 0.30 +0.1
495,099 + EX28DRAFT_3194 0.35 -2.5
495,099 + EX28DRAFT_3194 0.35 +1.6
495,100 - EX28DRAFT_3194 0.35 -1.3
495,100 - EX28DRAFT_3194 0.35 -2.3
495,106 + EX28DRAFT_3194 0.35 +0.2
495,106 + EX28DRAFT_3194 0.35 -0.5
495,110 + EX28DRAFT_3194 0.35 +0.5
495,111 - EX28DRAFT_3194 0.35 -0.8
495,193 - EX28DRAFT_3194 0.40 -2.5
495,373 + EX28DRAFT_3194 0.49 +0.3
495,375 + EX28DRAFT_3194 0.49 -0.1
495,376 - EX28DRAFT_3194 0.49 -0.2
495,463 + EX28DRAFT_3194 0.54 -0.0
495,469 - EX28DRAFT_3194 0.54 -1.4
495,498 - EX28DRAFT_3194 0.56 -0.7
495,516 + EX28DRAFT_3194 0.57 +0.1
495,517 - EX28DRAFT_3194 0.57 +0.5
495,558 + EX28DRAFT_3194 0.59 -0.7
495,561 + EX28DRAFT_3194 0.59 -0.8
495,642 + EX28DRAFT_3194 0.63 -0.6
495,642 + EX28DRAFT_3194 0.63 +1.5
495,643 - EX28DRAFT_3194 0.63 -4.0
495,688 + EX28DRAFT_3194 0.66 +0.1
495,689 - EX28DRAFT_3194 0.66 +0.1
495,730 + EX28DRAFT_3194 0.68 +0.3
495,785 - EX28DRAFT_3194 0.71 -0.3
495,955 + EX28DRAFT_3194 0.80 -0.1
495,955 + EX28DRAFT_3194 0.80 +0.6
495,955 + EX28DRAFT_3194 0.80 -0.2
495,955 + EX28DRAFT_3194 0.80 -0.4
495,955 + EX28DRAFT_3194 0.80 +0.0
495,955 + EX28DRAFT_3194 0.80 -1.0
495,956 - EX28DRAFT_3194 0.80 -0.9
495,956 - EX28DRAFT_3194 0.80 +1.6
495,956 - EX28DRAFT_3194 0.80 +0.9
495,956 - EX28DRAFT_3194 0.80 -0.2
495,956 - EX28DRAFT_3194 0.80 +0.2
495,957 + EX28DRAFT_3194 0.80 +0.5
495,957 + EX28DRAFT_3194 0.80 -0.2
495,957 + EX28DRAFT_3194 0.80 +1.4
495,957 + EX28DRAFT_3194 0.80 +1.0
495,957 + EX28DRAFT_3194 0.80 +0.7
495,958 - EX28DRAFT_3194 0.80 +4.4
496,160 - -0.3
496,163 - -0.8
496,173 - +0.9
496,232 - -0.6
496,232 - +0.5
496,240 - +0.5
496,263 + -0.5
496,282 - -1.3
496,326 + -0.2
496,326 + +0.0
496,342 - -0.7
496,425 + +0.4
496,429 + -0.1
496,429 + -0.2
496,430 - +1.0
496,430 - +0.3
496,430 - +0.7
496,431 + -0.4
496,432 - -1.0
496,558 + EX28DRAFT_3195 0.18 +0.8
496,558 + EX28DRAFT_3195 0.18 +0.6
496,558 + EX28DRAFT_3195 0.18 +3.6
496,721 - EX28DRAFT_3195 0.37 -0.5
496,721 - EX28DRAFT_3195 0.37 -1.3
496,796 + EX28DRAFT_3195 0.46 +1.4
496,796 + EX28DRAFT_3195 0.46 -0.1
496,942 + EX28DRAFT_3195 0.63 +2.0
496,942 + EX28DRAFT_3195 0.63 +1.3
496,943 - EX28DRAFT_3195 0.63 +0.7
497,213 + +0.0
497,213 + -0.9
497,220 + +0.2
497,220 + -0.1
497,220 + +1.2
497,221 - +0.0
497,240 - +0.3
497,276 - +1.4
497,286 + +0.1
497,331 - -0.2

Or see this region's nucleotide sequence