Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3158 and EX28DRAFT_3159 are separated by 86 nucleotides EX28DRAFT_3159 and EX28DRAFT_3160 are separated by 17 nucleotides
EX28DRAFT_3158: EX28DRAFT_3158 - Na+/serine symporter, at 459,917 to 461,158
_3158
EX28DRAFT_3159: EX28DRAFT_3159 - Altronate dehydratase, at 461,245 to 462,732
_3159
EX28DRAFT_3160: EX28DRAFT_3160 - Glucuronate isomerase, at 462,750 to 464,162
_3160
Position (kb) 461
462
463 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 460.358 kb on + strand, within EX28DRAFT_3158 at 460.359 kb on - strand, within EX28DRAFT_3158 at 460.359 kb on - strand, within EX28DRAFT_3158 at 460.359 kb on - strand, within EX28DRAFT_3158 at 460.463 kb on - strand, within EX28DRAFT_3158 at 460.588 kb on + strand, within EX28DRAFT_3158 at 460.589 kb on - strand, within EX28DRAFT_3158 at 460.589 kb on - strand, within EX28DRAFT_3158 at 460.689 kb on + strand, within EX28DRAFT_3158 at 460.690 kb on - strand, within EX28DRAFT_3158 at 460.692 kb on - strand, within EX28DRAFT_3158 at 460.692 kb on - strand, within EX28DRAFT_3158 at 460.775 kb on + strand, within EX28DRAFT_3158 at 460.775 kb on + strand, within EX28DRAFT_3158 at 460.776 kb on - strand, within EX28DRAFT_3158 at 460.982 kb on - strand, within EX28DRAFT_3158 at 460.984 kb on + strand, within EX28DRAFT_3158 at 460.984 kb on + strand, within EX28DRAFT_3158 at 460.984 kb on + strand, within EX28DRAFT_3158 at 460.984 kb on + strand, within EX28DRAFT_3158 at 460.984 kb on + strand, within EX28DRAFT_3158 at 460.985 kb on - strand, within EX28DRAFT_3158 at 460.985 kb on - strand, within EX28DRAFT_3158 at 461.036 kb on - strand at 461.156 kb on + strand at 461.162 kb on + strand at 461.163 kb on - strand at 461.163 kb on - strand at 461.208 kb on + strand at 461.208 kb on + strand at 461.209 kb on - strand at 461.246 kb on + strand at 461.247 kb on - strand at 461.335 kb on - strand at 461.335 kb on - strand at 461.337 kb on + strand at 461.674 kb on - strand, within EX28DRAFT_3159 at 461.741 kb on + strand, within EX28DRAFT_3159 at 461.814 kb on + strand, within EX28DRAFT_3159 at 461.875 kb on + strand, within EX28DRAFT_3159 at 461.875 kb on + strand, within EX28DRAFT_3159 at 461.876 kb on - strand, within EX28DRAFT_3159 at 461.879 kb on + strand, within EX28DRAFT_3159 at 462.009 kb on - strand, within EX28DRAFT_3159 at 462.069 kb on + strand, within EX28DRAFT_3159 at 462.242 kb on + strand, within EX28DRAFT_3159 at 462.242 kb on + strand, within EX28DRAFT_3159 at 462.243 kb on - strand, within EX28DRAFT_3159 at 462.243 kb on - strand, within EX28DRAFT_3159 at 462.401 kb on + strand, within EX28DRAFT_3159 at 462.458 kb on + strand, within EX28DRAFT_3159 at 462.459 kb on - strand, within EX28DRAFT_3159 at 462.464 kb on + strand, within EX28DRAFT_3159 at 462.464 kb on + strand, within EX28DRAFT_3159 at 462.465 kb on - strand, within EX28DRAFT_3159 at 462.465 kb on - strand, within EX28DRAFT_3159 at 462.496 kb on - strand, within EX28DRAFT_3159 at 462.512 kb on + strand, within EX28DRAFT_3159 at 462.513 kb on - strand, within EX28DRAFT_3159 at 462.725 kb on + strand at 462.726 kb on - strand at 462.726 kb on - strand at 462.726 kb on - strand at 462.733 kb on - strand at 462.772 kb on + strand at 462.789 kb on - strand at 462.825 kb on + strand at 462.826 kb on - strand at 462.826 kb on - strand at 462.907 kb on + strand, within EX28DRAFT_3160 at 462.907 kb on + strand, within EX28DRAFT_3160 at 462.908 kb on - strand, within EX28DRAFT_3160 at 463.117 kb on + strand, within EX28DRAFT_3160 at 463.118 kb on - strand, within EX28DRAFT_3160 at 463.434 kb on + strand, within EX28DRAFT_3160 at 463.434 kb on + strand, within EX28DRAFT_3160 at 463.435 kb on - strand, within EX28DRAFT_3160 at 463.564 kb on + strand, within EX28DRAFT_3160 at 463.565 kb on - strand, within EX28DRAFT_3160
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 460,358 + EX28DRAFT_3158 0.36 -3.1 460,359 - EX28DRAFT_3158 0.36 +0.8 460,359 - EX28DRAFT_3158 0.36 +0.3 460,359 - EX28DRAFT_3158 0.36 +0.0 460,463 - EX28DRAFT_3158 0.44 -1.9 460,588 + EX28DRAFT_3158 0.54 -0.7 460,589 - EX28DRAFT_3158 0.54 +0.6 460,589 - EX28DRAFT_3158 0.54 -1.9 460,689 + EX28DRAFT_3158 0.62 +0.1 460,690 - EX28DRAFT_3158 0.62 -0.1 460,692 - EX28DRAFT_3158 0.62 +0.2 460,692 - EX28DRAFT_3158 0.62 -0.2 460,775 + EX28DRAFT_3158 0.69 +0.1 460,775 + EX28DRAFT_3158 0.69 -0.1 460,776 - EX28DRAFT_3158 0.69 +1.1 460,982 - EX28DRAFT_3158 0.86 +0.3 460,984 + EX28DRAFT_3158 0.86 -1.7 460,984 + EX28DRAFT_3158 0.86 -0.1 460,984 + EX28DRAFT_3158 0.86 +0.5 460,984 + EX28DRAFT_3158 0.86 +0.7 460,984 + EX28DRAFT_3158 0.86 -0.6 460,985 - EX28DRAFT_3158 0.86 +0.8 460,985 - EX28DRAFT_3158 0.86 +0.0 461,036 - -0.2 461,156 + +0.0 461,162 + +0.0 461,163 - +0.3 461,163 - -0.2 461,208 + +0.4 461,208 + +0.2 461,209 - +1.0 461,246 + +1.0 461,247 - -0.2 461,335 - +0.4 461,335 - +0.1 461,337 + -0.1 461,674 - EX28DRAFT_3159 0.29 +0.2 461,741 + EX28DRAFT_3159 0.33 +0.5 461,814 + EX28DRAFT_3159 0.38 +0.0 461,875 + EX28DRAFT_3159 0.42 +1.0 461,875 + EX28DRAFT_3159 0.42 -0.2 461,876 - EX28DRAFT_3159 0.42 +0.2 461,879 + EX28DRAFT_3159 0.43 +0.3 462,009 - EX28DRAFT_3159 0.51 -0.1 462,069 + EX28DRAFT_3159 0.55 -1.0 462,242 + EX28DRAFT_3159 0.67 -2.4 462,242 + EX28DRAFT_3159 0.67 -0.3 462,243 - EX28DRAFT_3159 0.67 -1.1 462,243 - EX28DRAFT_3159 0.67 +0.9 462,401 + EX28DRAFT_3159 0.78 +0.3 462,458 + EX28DRAFT_3159 0.82 +0.9 462,459 - EX28DRAFT_3159 0.82 +0.1 462,464 + EX28DRAFT_3159 0.82 +0.3 462,464 + EX28DRAFT_3159 0.82 -0.1 462,465 - EX28DRAFT_3159 0.82 -2.4 462,465 - EX28DRAFT_3159 0.82 -0.7 462,496 - EX28DRAFT_3159 0.84 -0.7 462,512 + EX28DRAFT_3159 0.85 +1.3 462,513 - EX28DRAFT_3159 0.85 +0.2 462,725 + +0.3 462,726 - -0.6 462,726 - +0.0 462,726 - +1.0 462,733 - -4.2 462,772 + +0.3 462,789 - -0.1 462,825 + +0.6 462,826 - +0.4 462,826 - +0.4 462,907 + EX28DRAFT_3160 0.11 +1.4 462,907 + EX28DRAFT_3160 0.11 -0.7 462,908 - EX28DRAFT_3160 0.11 +1.1 463,117 + EX28DRAFT_3160 0.26 +0.3 463,118 - EX28DRAFT_3160 0.26 +0.8 463,434 + EX28DRAFT_3160 0.48 +0.2 463,434 + EX28DRAFT_3160 0.48 +1.8 463,435 - EX28DRAFT_3160 0.48 -0.6 463,564 + EX28DRAFT_3160 0.58 +0.9 463,565 - EX28DRAFT_3160 0.58 +0.3
Or see this region's nucleotide sequence