Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2919

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2917 and EX28DRAFT_2918 overlap by 6 nucleotidesEX28DRAFT_2918 and EX28DRAFT_2919 are separated by 88 nucleotidesEX28DRAFT_2919 and EX28DRAFT_2920 are separated by 203 nucleotides EX28DRAFT_2917: EX28DRAFT_2917 - Transcriptional regulator, at 227,785 to 228,711 _2917 EX28DRAFT_2918: EX28DRAFT_2918 - aspartate racemase, at 228,706 to 229,398 _2918 EX28DRAFT_2919: EX28DRAFT_2919 - Chain length determinant protein, at 229,487 to 230,611 _2919 EX28DRAFT_2920: EX28DRAFT_2920 - MFS transporter, sugar porter (SP) family, at 230,815 to 232,236 _2920 Position (kb) 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 228.568 kb on - strand, within EX28DRAFT_2917at 228.686 kb on + strandat 228.867 kb on - strand, within EX28DRAFT_2918at 228.869 kb on + strand, within EX28DRAFT_2918at 228.919 kb on - strand, within EX28DRAFT_2918at 229.019 kb on + strand, within EX28DRAFT_2918at 229.020 kb on - strand, within EX28DRAFT_2918at 229.020 kb on - strand, within EX28DRAFT_2918at 229.089 kb on + strand, within EX28DRAFT_2918at 229.123 kb on - strand, within EX28DRAFT_2918at 229.146 kb on + strand, within EX28DRAFT_2918at 229.146 kb on + strand, within EX28DRAFT_2918at 229.152 kb on + strand, within EX28DRAFT_2918at 229.409 kb on + strandat 229.409 kb on + strandat 229.409 kb on + strandat 229.410 kb on - strandat 229.410 kb on - strandat 229.444 kb on + strandat 229.445 kb on - strandat 229.445 kb on - strandat 229.460 kb on - strandat 229.666 kb on + strand, within EX28DRAFT_2919at 229.705 kb on - strand, within EX28DRAFT_2919at 229.707 kb on + strand, within EX28DRAFT_2919at 229.707 kb on + strand, within EX28DRAFT_2919at 229.707 kb on + strand, within EX28DRAFT_2919at 229.707 kb on + strand, within EX28DRAFT_2919at 229.826 kb on + strand, within EX28DRAFT_2919at 229.845 kb on + strand, within EX28DRAFT_2919at 229.890 kb on + strand, within EX28DRAFT_2919at 229.913 kb on - strand, within EX28DRAFT_2919at 229.913 kb on - strand, within EX28DRAFT_2919at 230.032 kb on + strand, within EX28DRAFT_2919at 230.035 kb on - strand, within EX28DRAFT_2919at 230.035 kb on - strand, within EX28DRAFT_2919at 230.043 kb on + strand, within EX28DRAFT_2919at 230.043 kb on + strand, within EX28DRAFT_2919at 230.044 kb on - strand, within EX28DRAFT_2919at 230.044 kb on - strand, within EX28DRAFT_2919at 230.236 kb on - strand, within EX28DRAFT_2919at 230.236 kb on - strand, within EX28DRAFT_2919at 230.236 kb on - strand, within EX28DRAFT_2919at 230.253 kb on + strand, within EX28DRAFT_2919at 230.290 kb on + strand, within EX28DRAFT_2919at 230.291 kb on - strand, within EX28DRAFT_2919at 230.291 kb on - strand, within EX28DRAFT_2919at 230.399 kb on - strand, within EX28DRAFT_2919at 230.410 kb on + strand, within EX28DRAFT_2919at 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.560 kb on + strandat 230.561 kb on - strandat 230.611 kb on + strandat 230.611 kb on + strandat 230.611 kb on + strandat 230.612 kb on - strandat 230.612 kb on - strandat 230.612 kb on - strandat 230.612 kb on - strandat 230.628 kb on - strandat 230.672 kb on + strandat 230.672 kb on + strandat 230.672 kb on + strandat 230.672 kb on + strandat 230.673 kb on - strandat 230.673 kb on - strandat 230.682 kb on + strandat 230.719 kb on + strandat 230.779 kb on - strandat 230.794 kb on + strandat 230.805 kb on + strandat 230.871 kb on + strandat 230.871 kb on + strandat 230.946 kb on + strandat 230.946 kb on + strandat 230.946 kb on + strandat 230.946 kb on + strandat 230.947 kb on - strandat 230.947 kb on - strandat 230.947 kb on - strandat 230.949 kb on - strandat 230.949 kb on - strandat 230.949 kb on - strandat 231.136 kb on - strand, within EX28DRAFT_2920at 231.136 kb on - strand, within EX28DRAFT_2920at 231.136 kb on - strand, within EX28DRAFT_2920at 231.247 kb on - strand, within EX28DRAFT_2920at 231.304 kb on - strand, within EX28DRAFT_2920at 231.404 kb on + strand, within EX28DRAFT_2920at 231.405 kb on - strand, within EX28DRAFT_2920at 231.405 kb on - strand, within EX28DRAFT_2920at 231.414 kb on + strand, within EX28DRAFT_2920at 231.414 kb on + strand, within EX28DRAFT_2920at 231.415 kb on - strand, within EX28DRAFT_2920at 231.415 kb on - strand, within EX28DRAFT_2920at 231.492 kb on + strand, within EX28DRAFT_2920at 231.492 kb on + strand, within EX28DRAFT_2920at 231.492 kb on + strand, within EX28DRAFT_2920at 231.493 kb on - strand, within EX28DRAFT_2920

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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228,568 - EX28DRAFT_2917 0.84 -1.8
228,686 + -0.9
228,867 - EX28DRAFT_2918 0.23 +0.1
228,869 + EX28DRAFT_2918 0.24 +0.1
228,919 - EX28DRAFT_2918 0.31 +0.7
229,019 + EX28DRAFT_2918 0.45 +0.3
229,020 - EX28DRAFT_2918 0.45 -0.6
229,020 - EX28DRAFT_2918 0.45 -2.0
229,089 + EX28DRAFT_2918 0.55 +0.4
229,123 - EX28DRAFT_2918 0.60 +0.2
229,146 + EX28DRAFT_2918 0.63 +0.2
229,146 + EX28DRAFT_2918 0.63 +0.2
229,152 + EX28DRAFT_2918 0.64 +0.5
229,409 + +0.1
229,409 + +0.2
229,409 + -1.3
229,410 - -0.7
229,410 - +0.2
229,444 + +0.8
229,445 - +1.5
229,445 - +0.4
229,460 - -0.3
229,666 + EX28DRAFT_2919 0.16 +2.2
229,705 - EX28DRAFT_2919 0.19 +1.0
229,707 + EX28DRAFT_2919 0.20 -0.7
229,707 + EX28DRAFT_2919 0.20 -0.0
229,707 + EX28DRAFT_2919 0.20 +0.1
229,707 + EX28DRAFT_2919 0.20 +1.6
229,826 + EX28DRAFT_2919 0.30 +0.7
229,845 + EX28DRAFT_2919 0.32 +0.7
229,890 + EX28DRAFT_2919 0.36 +0.7
229,913 - EX28DRAFT_2919 0.38 +0.9
229,913 - EX28DRAFT_2919 0.38 -1.9
230,032 + EX28DRAFT_2919 0.48 -0.3
230,035 - EX28DRAFT_2919 0.49 +0.6
230,035 - EX28DRAFT_2919 0.49 -2.1
230,043 + EX28DRAFT_2919 0.49 +1.1
230,043 + EX28DRAFT_2919 0.49 -3.1
230,044 - EX28DRAFT_2919 0.50 +0.3
230,044 - EX28DRAFT_2919 0.50 +1.1
230,236 - EX28DRAFT_2919 0.67 +0.8
230,236 - EX28DRAFT_2919 0.67 +0.5
230,236 - EX28DRAFT_2919 0.67 +0.2
230,253 + EX28DRAFT_2919 0.68 -0.9
230,290 + EX28DRAFT_2919 0.71 +0.3
230,291 - EX28DRAFT_2919 0.71 +0.1
230,291 - EX28DRAFT_2919 0.71 +0.7
230,399 - EX28DRAFT_2919 0.81 +1.2
230,410 + EX28DRAFT_2919 0.82 -0.2
230,560 + +0.4
230,560 + +0.4
230,560 + +0.4
230,560 + +0.3
230,561 - -0.4
230,611 + +0.6
230,611 + -0.3
230,611 + +0.7
230,612 - +0.2
230,612 - +1.4
230,612 - +0.2
230,612 - +0.7
230,628 - -1.2
230,672 + +0.4
230,672 + +1.0
230,672 + +1.2
230,672 + -1.3
230,673 - +0.6
230,673 - -1.1
230,682 + +0.6
230,719 + -0.5
230,779 - -0.2
230,794 + +0.4
230,805 + +1.1
230,871 + -0.3
230,871 + -1.3
230,946 + +0.1
230,946 + +3.4
230,946 + +1.4
230,946 + -1.8
230,947 - -0.1
230,947 - -0.6
230,947 - -0.6
230,949 - +0.3
230,949 - +1.3
230,949 - -0.1
231,136 - EX28DRAFT_2920 0.23 -2.2
231,136 - EX28DRAFT_2920 0.23 +0.1
231,136 - EX28DRAFT_2920 0.23 -0.6
231,247 - EX28DRAFT_2920 0.30 -0.5
231,304 - EX28DRAFT_2920 0.34 +0.1
231,404 + EX28DRAFT_2920 0.41 +0.8
231,405 - EX28DRAFT_2920 0.41 -0.2
231,405 - EX28DRAFT_2920 0.41 -1.0
231,414 + EX28DRAFT_2920 0.42 +0.7
231,414 + EX28DRAFT_2920 0.42 +0.6
231,415 - EX28DRAFT_2920 0.42 +0.2
231,415 - EX28DRAFT_2920 0.42 +0.2
231,492 + EX28DRAFT_2920 0.48 +0.4
231,492 + EX28DRAFT_2920 0.48 -0.1
231,492 + EX28DRAFT_2920 0.48 +0.5
231,493 - EX28DRAFT_2920 0.48 -0.3

Or see this region's nucleotide sequence