Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2817

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2815 and EX28DRAFT_2816 are separated by 69 nucleotidesEX28DRAFT_2816 and EX28DRAFT_2817 are separated by 211 nucleotidesEX28DRAFT_2817 and EX28DRAFT_2818 are separated by 3 nucleotidesEX28DRAFT_2818 and EX28DRAFT_2819 overlap by 10 nucleotides EX28DRAFT_2815: EX28DRAFT_2815 - Fe-S-cluster-containing hydrogenase components 2, at 119,458 to 120,066 _2815 EX28DRAFT_2816: EX28DRAFT_2816 - Transcriptional repressor of hyc and hyp operons, at 120,136 to 120,600 _2816 EX28DRAFT_2817: EX28DRAFT_2817 - hydrogenase nickel insertion protein HypA, at 120,812 to 121,162 _2817 EX28DRAFT_2818: EX28DRAFT_2818 - hydrogenase accessory protein HypB, at 121,166 to 122,029 _2818 EX28DRAFT_2819: EX28DRAFT_2819 - hydrogenase assembly chaperone HypC/HupF, at 122,020 to 122,292 _2819 Position (kb) 120 121 122Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 120.085 kb on + strandat 120.086 kb on - strandat 120.212 kb on + strand, within EX28DRAFT_2816at 120.224 kb on + strand, within EX28DRAFT_2816at 120.225 kb on - strand, within EX28DRAFT_2816at 120.249 kb on - strand, within EX28DRAFT_2816at 120.330 kb on + strand, within EX28DRAFT_2816at 120.330 kb on + strand, within EX28DRAFT_2816at 120.497 kb on - strand, within EX28DRAFT_2816at 120.567 kb on - strandat 120.595 kb on - strandat 120.600 kb on + strandat 120.601 kb on - strandat 120.601 kb on - strandat 121.046 kb on + strand, within EX28DRAFT_2817at 121.047 kb on - strand, within EX28DRAFT_2817at 121.047 kb on - strand, within EX28DRAFT_2817at 121.047 kb on - strand, within EX28DRAFT_2817at 121.047 kb on - strand, within EX28DRAFT_2817at 121.047 kb on - strand, within EX28DRAFT_2817at 121.047 kb on - strand, within EX28DRAFT_2817at 121.165 kb on + strandat 121.166 kb on - strandat 121.166 kb on - strandat 121.166 kb on - strandat 121.166 kb on - strandat 121.171 kb on + strandat 121.172 kb on - strandat 121.202 kb on + strandat 121.202 kb on + strandat 121.202 kb on + strandat 121.202 kb on + strandat 121.202 kb on + strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.204 kb on + strandat 121.204 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.207 kb on - strandat 121.207 kb on - strandat 121.207 kb on - strandat 121.207 kb on - strandat 121.207 kb on - strandat 121.837 kb on + strand, within EX28DRAFT_2818at 121.837 kb on + strand, within EX28DRAFT_2818at 121.838 kb on - strand, within EX28DRAFT_2818at 121.889 kb on + strand, within EX28DRAFT_2818at 121.905 kb on + strand, within EX28DRAFT_2818at 121.906 kb on - strand, within EX28DRAFT_2818at 121.909 kb on + strand, within EX28DRAFT_2818at 121.909 kb on + strand, within EX28DRAFT_2818at 121.909 kb on + strand, within EX28DRAFT_2818at 121.910 kb on - strand, within EX28DRAFT_2818at 121.910 kb on - strand, within EX28DRAFT_2818at 121.910 kb on - strand, within EX28DRAFT_2818at 121.910 kb on - strand, within EX28DRAFT_2818at 121.922 kb on + strand, within EX28DRAFT_2818at 121.922 kb on + strand, within EX28DRAFT_2818at 121.923 kb on - strand, within EX28DRAFT_2818at 122.028 kb on - strandat 122.028 kb on - strandat 122.047 kb on + strandat 122.048 kb on - strand, within EX28DRAFT_2819at 122.048 kb on - strand, within EX28DRAFT_2819

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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120,085 + +0.3
120,086 - -2.1
120,212 + EX28DRAFT_2816 0.16 -1.0
120,224 + EX28DRAFT_2816 0.19 +1.5
120,225 - EX28DRAFT_2816 0.19 -0.5
120,249 - EX28DRAFT_2816 0.24 +0.2
120,330 + EX28DRAFT_2816 0.42 -0.3
120,330 + EX28DRAFT_2816 0.42 +0.5
120,497 - EX28DRAFT_2816 0.78 -0.2
120,567 - +0.9
120,595 - +1.3
120,600 + +0.2
120,601 - -1.8
120,601 - -0.1
121,046 + EX28DRAFT_2817 0.67 -0.7
121,047 - EX28DRAFT_2817 0.67 -0.0
121,047 - EX28DRAFT_2817 0.67 +0.1
121,047 - EX28DRAFT_2817 0.67 -0.7
121,047 - EX28DRAFT_2817 0.67 -0.9
121,047 - EX28DRAFT_2817 0.67 +1.2
121,047 - EX28DRAFT_2817 0.67 +0.3
121,165 + -0.5
121,166 - +0.6
121,166 - +0.5
121,166 - -0.6
121,166 - +1.9
121,171 + +0.4
121,172 - +0.0
121,202 + -0.1
121,202 + -0.3
121,202 + -3.2
121,202 + +0.3
121,202 + +1.0
121,203 - -0.8
121,203 - -0.1
121,203 - +0.5
121,203 - +0.3
121,203 - -0.1
121,203 - +0.6
121,203 - -4.0
121,203 - +0.2
121,204 + -3.3
121,204 + +0.0
121,206 + -0.7
121,206 + -0.3
121,206 + +0.7
121,206 + -2.6
121,206 + +0.1
121,206 + +0.7
121,206 + +0.4
121,206 + -1.2
121,206 + +0.4
121,207 - +0.2
121,207 - +0.1
121,207 - +0.2
121,207 - -0.4
121,207 - +0.1
121,837 + EX28DRAFT_2818 0.78 +0.7
121,837 + EX28DRAFT_2818 0.78 -0.5
121,838 - EX28DRAFT_2818 0.78 -0.7
121,889 + EX28DRAFT_2818 0.84 -1.3
121,905 + EX28DRAFT_2818 0.86 +0.8
121,906 - EX28DRAFT_2818 0.86 +0.5
121,909 + EX28DRAFT_2818 0.86 +0.4
121,909 + EX28DRAFT_2818 0.86 -0.1
121,909 + EX28DRAFT_2818 0.86 -0.5
121,910 - EX28DRAFT_2818 0.86 -0.9
121,910 - EX28DRAFT_2818 0.86 -0.5
121,910 - EX28DRAFT_2818 0.86 -0.4
121,910 - EX28DRAFT_2818 0.86 +1.9
121,922 + EX28DRAFT_2818 0.88 -0.5
121,922 + EX28DRAFT_2818 0.88 +0.4
121,923 - EX28DRAFT_2818 0.88 +0.5
122,028 - +0.3
122,028 - +0.3
122,047 + -0.6
122,048 - EX28DRAFT_2819 0.10 -1.2
122,048 - EX28DRAFT_2819 0.10 +0.0

Or see this region's nucleotide sequence