Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2782

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2776 and EX28DRAFT_2777 are separated by 117 nucleotidesEX28DRAFT_2777 and EX28DRAFT_2778 are separated by 1 nucleotidesEX28DRAFT_2778 and EX28DRAFT_2779 are separated by 29 nucleotidesEX28DRAFT_2779 and EX28DRAFT_2780 are separated by 29 nucleotidesEX28DRAFT_2780 and EX28DRAFT_2781 are separated by 4 nucleotidesEX28DRAFT_2781 and EX28DRAFT_2782 are separated by 342 nucleotidesEX28DRAFT_2782 and EX28DRAFT_2783 are separated by 241 nucleotides EX28DRAFT_2776: EX28DRAFT_2776 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/beta-phosphoglucomutase family hydrolase, at 83,949 to 84,515 _2776 EX28DRAFT_2777: EX28DRAFT_2777 - RNA, at 84,633 to 84,764 _2777 EX28DRAFT_2778: EX28DRAFT_2778 - tRNA, at 84,766 to 84,842 _2778 EX28DRAFT_2779: EX28DRAFT_2779 - tRNA, at 84,872 to 84,948 _2779 EX28DRAFT_2780: EX28DRAFT_2780 - tRNA, at 84,978 to 85,054 _2780 EX28DRAFT_2781: EX28DRAFT_2781 - tRNA, at 85,059 to 85,151 _2781 EX28DRAFT_2782: EX28DRAFT_2782 - carbon storage regulator, CsrA, at 85,494 to 85,679 _2782 EX28DRAFT_2783: EX28DRAFT_2783 - alanyl-tRNA synthetase (EC 6.1.1.7), at 85,921 to 88,548 _2783 Position (kb) 85 86Strain fitness (log2 ratio) -2 -1 0 1at 84.503 kb on - strandat 84.511 kb on + strandat 84.511 kb on + strandat 84.512 kb on - strandat 84.512 kb on - strandat 84.546 kb on + strandat 84.556 kb on + strandat 84.557 kb on - strandat 84.718 kb on + strand, within EX28DRAFT_2777at 84.753 kb on - strandat 84.765 kb on - strandat 84.765 kb on - strandat 84.860 kb on - strandat 84.868 kb on + strandat 84.869 kb on - strandat 85.374 kb on + strandat 85.739 kb on + strandat 85.740 kb on - strandat 85.740 kb on - strandat 85.741 kb on + strandat 85.742 kb on - strandat 85.773 kb on - strandat 85.773 kb on - strandat 85.779 kb on + strandat 85.812 kb on - strandat 85.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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84,503 - +0.7
84,511 + -1.5
84,511 + -0.3
84,512 - +0.3
84,512 - -0.2
84,546 + +0.4
84,556 + +0.6
84,557 - -0.1
84,718 + EX28DRAFT_2777 0.64 -0.0
84,753 - -2.6
84,765 - +0.1
84,765 - +0.7
84,860 - +0.7
84,868 + +1.5
84,869 - +0.7
85,374 + +0.4
85,739 + -2.1
85,740 - +1.3
85,740 - -0.2
85,741 + -0.7
85,742 - +0.2
85,773 - +1.0
85,773 - +0.0
85,779 + -0.4
85,812 - +0.4
85,827 - +0.2

Or see this region's nucleotide sequence