Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2571

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2570 and EX28DRAFT_2571 are separated by 88 nucleotidesEX28DRAFT_2571 and EX28DRAFT_2572 are separated by 139 nucleotides EX28DRAFT_2570: EX28DRAFT_2570 - Predicted membrane protein, at 2,600,942 to 2,603,557 _2570 EX28DRAFT_2571: EX28DRAFT_2571 - Glycosidases, at 2,603,646 to 2,605,472 _2571 EX28DRAFT_2572: EX28DRAFT_2572 - Gamma-aminobutyrate permease and related permeases, at 2,605,612 to 2,606,985 _2572 Position (kb) 2603 2604 2605 2606Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2602.654 kb on - strand, within EX28DRAFT_2570at 2602.690 kb on + strand, within EX28DRAFT_2570at 2602.691 kb on - strand, within EX28DRAFT_2570at 2602.981 kb on - strand, within EX28DRAFT_2570at 2603.020 kb on - strand, within EX28DRAFT_2570at 2603.131 kb on - strand, within EX28DRAFT_2570at 2603.226 kb on - strand, within EX28DRAFT_2570at 2603.467 kb on + strandat 2603.467 kb on + strandat 2603.519 kb on + strandat 2603.544 kb on + strandat 2603.544 kb on + strandat 2603.545 kb on - strandat 2603.601 kb on + strandat 2603.601 kb on + strandat 2603.601 kb on + strandat 2603.601 kb on + strandat 2603.602 kb on - strandat 2603.602 kb on - strandat 2603.602 kb on - strandat 2603.621 kb on + strandat 2603.622 kb on - strandat 2603.647 kb on + strandat 2603.703 kb on + strandat 2603.723 kb on + strandat 2603.831 kb on - strand, within EX28DRAFT_2571at 2603.866 kb on + strand, within EX28DRAFT_2571at 2603.909 kb on + strand, within EX28DRAFT_2571at 2603.910 kb on - strand, within EX28DRAFT_2571at 2604.031 kb on + strand, within EX28DRAFT_2571at 2604.032 kb on - strand, within EX28DRAFT_2571at 2604.032 kb on - strand, within EX28DRAFT_2571at 2604.034 kb on + strand, within EX28DRAFT_2571at 2604.034 kb on + strand, within EX28DRAFT_2571at 2604.034 kb on + strand, within EX28DRAFT_2571at 2604.035 kb on - strand, within EX28DRAFT_2571at 2604.190 kb on + strand, within EX28DRAFT_2571at 2604.456 kb on - strand, within EX28DRAFT_2571at 2604.456 kb on - strand, within EX28DRAFT_2571at 2604.841 kb on + strand, within EX28DRAFT_2571at 2604.841 kb on + strand, within EX28DRAFT_2571at 2604.842 kb on - strand, within EX28DRAFT_2571at 2604.911 kb on - strand, within EX28DRAFT_2571at 2604.950 kb on - strand, within EX28DRAFT_2571at 2605.033 kb on + strand, within EX28DRAFT_2571at 2605.033 kb on + strand, within EX28DRAFT_2571at 2605.033 kb on + strand, within EX28DRAFT_2571at 2605.033 kb on + strand, within EX28DRAFT_2571at 2605.040 kb on + strand, within EX28DRAFT_2571at 2605.214 kb on + strand, within EX28DRAFT_2571at 2605.214 kb on + strand, within EX28DRAFT_2571at 2605.230 kb on - strand, within EX28DRAFT_2571at 2605.350 kb on + strandat 2605.351 kb on - strandat 2605.407 kb on - strandat 2605.526 kb on + strandat 2605.527 kb on - strandat 2605.613 kb on + strandat 2605.614 kb on - strandat 2605.866 kb on + strand, within EX28DRAFT_2572at 2605.937 kb on + strand, within EX28DRAFT_2572at 2605.938 kb on - strand, within EX28DRAFT_2572at 2605.938 kb on - strand, within EX28DRAFT_2572at 2605.938 kb on - strand, within EX28DRAFT_2572at 2605.938 kb on - strand, within EX28DRAFT_2572at 2605.938 kb on - strand, within EX28DRAFT_2572at 2605.938 kb on - strand, within EX28DRAFT_2572at 2605.938 kb on - strand, within EX28DRAFT_2572at 2606.214 kb on - strand, within EX28DRAFT_2572at 2606.214 kb on - strand, within EX28DRAFT_2572at 2606.223 kb on + strand, within EX28DRAFT_2572at 2606.224 kb on - strand, within EX28DRAFT_2572at 2606.247 kb on - strand, within EX28DRAFT_2572at 2606.247 kb on - strand, within EX28DRAFT_2572

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,602,654 - EX28DRAFT_2570 0.65 +0.5
2,602,690 + EX28DRAFT_2570 0.67 +0.0
2,602,691 - EX28DRAFT_2570 0.67 -2.6
2,602,981 - EX28DRAFT_2570 0.78 +0.3
2,603,020 - EX28DRAFT_2570 0.79 +1.4
2,603,131 - EX28DRAFT_2570 0.84 +0.6
2,603,226 - EX28DRAFT_2570 0.87 -0.2
2,603,467 + -0.5
2,603,467 + +0.7
2,603,519 + -0.3
2,603,544 + -2.9
2,603,544 + -0.0
2,603,545 - -2.5
2,603,601 + -1.3
2,603,601 + -0.4
2,603,601 + +0.4
2,603,601 + -0.2
2,603,602 - +0.7
2,603,602 - -0.3
2,603,602 - +0.2
2,603,621 + +0.1
2,603,622 - +0.9
2,603,647 + -0.2
2,603,703 + -0.3
2,603,723 + -0.5
2,603,831 - EX28DRAFT_2571 0.10 -0.4
2,603,866 + EX28DRAFT_2571 0.12 +1.1
2,603,909 + EX28DRAFT_2571 0.14 -1.5
2,603,910 - EX28DRAFT_2571 0.14 +0.1
2,604,031 + EX28DRAFT_2571 0.21 +1.6
2,604,032 - EX28DRAFT_2571 0.21 +0.3
2,604,032 - EX28DRAFT_2571 0.21 +0.4
2,604,034 + EX28DRAFT_2571 0.21 -0.2
2,604,034 + EX28DRAFT_2571 0.21 -0.5
2,604,034 + EX28DRAFT_2571 0.21 +1.6
2,604,035 - EX28DRAFT_2571 0.21 +0.2
2,604,190 + EX28DRAFT_2571 0.30 -0.1
2,604,456 - EX28DRAFT_2571 0.44 -1.0
2,604,456 - EX28DRAFT_2571 0.44 -0.0
2,604,841 + EX28DRAFT_2571 0.65 -2.1
2,604,841 + EX28DRAFT_2571 0.65 +1.0
2,604,842 - EX28DRAFT_2571 0.65 +0.4
2,604,911 - EX28DRAFT_2571 0.69 +1.8
2,604,950 - EX28DRAFT_2571 0.71 +0.1
2,605,033 + EX28DRAFT_2571 0.76 +0.3
2,605,033 + EX28DRAFT_2571 0.76 +0.6
2,605,033 + EX28DRAFT_2571 0.76 +0.4
2,605,033 + EX28DRAFT_2571 0.76 +0.1
2,605,040 + EX28DRAFT_2571 0.76 -2.2
2,605,214 + EX28DRAFT_2571 0.86 +0.0
2,605,214 + EX28DRAFT_2571 0.86 +0.9
2,605,230 - EX28DRAFT_2571 0.87 +0.3
2,605,350 + +0.6
2,605,351 - -0.6
2,605,407 - -1.2
2,605,526 + -0.4
2,605,527 - -0.4
2,605,613 + +0.4
2,605,614 - +0.4
2,605,866 + EX28DRAFT_2572 0.18 -0.0
2,605,937 + EX28DRAFT_2572 0.24 +0.2
2,605,938 - EX28DRAFT_2572 0.24 +1.0
2,605,938 - EX28DRAFT_2572 0.24 +0.0
2,605,938 - EX28DRAFT_2572 0.24 -0.2
2,605,938 - EX28DRAFT_2572 0.24 -0.5
2,605,938 - EX28DRAFT_2572 0.24 +0.0
2,605,938 - EX28DRAFT_2572 0.24 +0.2
2,605,938 - EX28DRAFT_2572 0.24 -0.2
2,606,214 - EX28DRAFT_2572 0.44 +0.1
2,606,214 - EX28DRAFT_2572 0.44 +0.5
2,606,223 + EX28DRAFT_2572 0.44 -0.4
2,606,224 - EX28DRAFT_2572 0.45 +1.1
2,606,247 - EX28DRAFT_2572 0.46 +0.1
2,606,247 - EX28DRAFT_2572 0.46 -1.3

Or see this region's nucleotide sequence