Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2496 and EX28DRAFT_2497 are separated by 510 nucleotides EX28DRAFT_2497 and EX28DRAFT_2498 are separated by 27 nucleotides EX28DRAFT_2498 and EX28DRAFT_2499 are separated by 205 nucleotides
EX28DRAFT_2496: EX28DRAFT_2496 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 2,526,944 to 2,530,090
_2496
EX28DRAFT_2497: EX28DRAFT_2497 - Biofilm formation regulator YbaJ, at 2,530,601 to 2,530,975
_2497
EX28DRAFT_2498: EX28DRAFT_2498 - Haemolysin expression modulating protein, at 2,531,003 to 2,531,221
_2498
EX28DRAFT_2499: EX28DRAFT_2499 - Acetyltransferase (isoleucine patch superfamily), at 2,531,427 to 2,531,978
_2499
Position (kb)
2530
2531 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2529.717 kb on - strand, within EX28DRAFT_2496 at 2529.717 kb on - strand, within EX28DRAFT_2496 at 2529.717 kb on - strand, within EX28DRAFT_2496 at 2529.768 kb on + strand, within EX28DRAFT_2496 at 2529.772 kb on + strand, within EX28DRAFT_2496 at 2529.948 kb on + strand at 2529.953 kb on - strand at 2530.194 kb on - strand at 2530.301 kb on - strand at 2530.308 kb on + strand at 2530.343 kb on + strand at 2530.384 kb on - strand at 2530.496 kb on + strand at 2530.496 kb on + strand at 2530.497 kb on - strand at 2530.502 kb on + strand at 2530.530 kb on - strand at 2530.530 kb on - strand at 2530.534 kb on - strand at 2530.534 kb on - strand at 2530.534 kb on - strand at 2530.544 kb on + strand at 2530.781 kb on - strand, within EX28DRAFT_2497 at 2530.781 kb on - strand, within EX28DRAFT_2497 at 2530.781 kb on - strand, within EX28DRAFT_2497 at 2530.784 kb on + strand, within EX28DRAFT_2497 at 2530.811 kb on - strand, within EX28DRAFT_2497 at 2530.835 kb on + strand, within EX28DRAFT_2497 at 2530.903 kb on + strand, within EX28DRAFT_2497 at 2530.988 kb on + strand at 2530.989 kb on - strand at 2531.002 kb on + strand at 2531.132 kb on + strand, within EX28DRAFT_2498 at 2531.194 kb on + strand, within EX28DRAFT_2498 at 2531.263 kb on + strand at 2531.267 kb on + strand at 2531.267 kb on + strand at 2531.267 kb on + strand at 2531.268 kb on - strand at 2531.272 kb on - strand at 2531.521 kb on + strand, within EX28DRAFT_2499 at 2531.522 kb on - strand, within EX28DRAFT_2499 at 2531.522 kb on - strand, within EX28DRAFT_2499 at 2531.530 kb on - strand, within EX28DRAFT_2499 at 2531.607 kb on + strand, within EX28DRAFT_2499 at 2531.607 kb on + strand, within EX28DRAFT_2499 at 2531.607 kb on + strand, within EX28DRAFT_2499 at 2531.607 kb on + strand, within EX28DRAFT_2499 at 2531.608 kb on - strand, within EX28DRAFT_2499 at 2531.608 kb on - strand, within EX28DRAFT_2499 at 2531.609 kb on + strand, within EX28DRAFT_2499 at 2531.610 kb on - strand, within EX28DRAFT_2499 at 2531.610 kb on - strand, within EX28DRAFT_2499 at 2531.610 kb on - strand, within EX28DRAFT_2499 at 2531.610 kb on - strand, within EX28DRAFT_2499 at 2531.611 kb on + strand, within EX28DRAFT_2499 at 2531.612 kb on - strand, within EX28DRAFT_2499 at 2531.612 kb on - strand, within EX28DRAFT_2499 at 2531.635 kb on - strand, within EX28DRAFT_2499 at 2531.643 kb on - strand, within EX28DRAFT_2499 at 2531.643 kb on - strand, within EX28DRAFT_2499 at 2531.650 kb on - strand, within EX28DRAFT_2499 at 2531.747 kb on + strand, within EX28DRAFT_2499 at 2531.747 kb on + strand, within EX28DRAFT_2499 at 2531.751 kb on + strand, within EX28DRAFT_2499 at 2531.751 kb on + strand, within EX28DRAFT_2499 at 2531.752 kb on - strand, within EX28DRAFT_2499
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,529,717 - EX28DRAFT_2496 0.88 -1.5 2,529,717 - EX28DRAFT_2496 0.88 +0.2 2,529,717 - EX28DRAFT_2496 0.88 +1.7 2,529,768 + EX28DRAFT_2496 0.90 +1.1 2,529,772 + EX28DRAFT_2496 0.90 -0.8 2,529,948 + +1.7 2,529,953 - +0.4 2,530,194 - +0.0 2,530,301 - -2.2 2,530,308 + +0.4 2,530,343 + -0.2 2,530,384 - +1.1 2,530,496 + +0.0 2,530,496 + -0.3 2,530,497 - +0.6 2,530,502 + -0.3 2,530,530 - -3.6 2,530,530 - -1.0 2,530,534 - +0.6 2,530,534 - +0.8 2,530,534 - +2.4 2,530,544 + +2.0 2,530,781 - EX28DRAFT_2497 0.48 +0.3 2,530,781 - EX28DRAFT_2497 0.48 -1.4 2,530,781 - EX28DRAFT_2497 0.48 -0.5 2,530,784 + EX28DRAFT_2497 0.49 -1.4 2,530,811 - EX28DRAFT_2497 0.56 -0.4 2,530,835 + EX28DRAFT_2497 0.62 -1.0 2,530,903 + EX28DRAFT_2497 0.81 -0.7 2,530,988 + -0.8 2,530,989 - -0.2 2,531,002 + -0.5 2,531,132 + EX28DRAFT_2498 0.59 +0.3 2,531,194 + EX28DRAFT_2498 0.87 -0.2 2,531,263 + -0.4 2,531,267 + -0.1 2,531,267 + -1.5 2,531,267 + -0.3 2,531,268 - -0.1 2,531,272 - +0.0 2,531,521 + EX28DRAFT_2499 0.17 -3.9 2,531,522 - EX28DRAFT_2499 0.17 -2.5 2,531,522 - EX28DRAFT_2499 0.17 +0.8 2,531,530 - EX28DRAFT_2499 0.19 -2.7 2,531,607 + EX28DRAFT_2499 0.33 +1.1 2,531,607 + EX28DRAFT_2499 0.33 +2.9 2,531,607 + EX28DRAFT_2499 0.33 -1.5 2,531,607 + EX28DRAFT_2499 0.33 -3.3 2,531,608 - EX28DRAFT_2499 0.33 +0.5 2,531,608 - EX28DRAFT_2499 0.33 +0.5 2,531,609 + EX28DRAFT_2499 0.33 -0.3 2,531,610 - EX28DRAFT_2499 0.33 -0.1 2,531,610 - EX28DRAFT_2499 0.33 +0.5 2,531,610 - EX28DRAFT_2499 0.33 +0.6 2,531,610 - EX28DRAFT_2499 0.33 +0.2 2,531,611 + EX28DRAFT_2499 0.33 -2.9 2,531,612 - EX28DRAFT_2499 0.34 -0.7 2,531,612 - EX28DRAFT_2499 0.34 +0.8 2,531,635 - EX28DRAFT_2499 0.38 -0.1 2,531,643 - EX28DRAFT_2499 0.39 -1.9 2,531,643 - EX28DRAFT_2499 0.39 -0.1 2,531,650 - EX28DRAFT_2499 0.40 +1.3 2,531,747 + EX28DRAFT_2499 0.58 -3.1 2,531,747 + EX28DRAFT_2499 0.58 +0.1 2,531,751 + EX28DRAFT_2499 0.59 -0.4 2,531,751 + EX28DRAFT_2499 0.59 -0.6 2,531,752 - EX28DRAFT_2499 0.59 -2.3
Or see this region's nucleotide sequence