Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2367

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2365 and EX28DRAFT_2366 are separated by 183 nucleotidesEX28DRAFT_2366 and EX28DRAFT_2367 overlap by 29 nucleotidesEX28DRAFT_2367 and EX28DRAFT_2368 overlap by 4 nucleotidesEX28DRAFT_2368 and EX28DRAFT_2369 are separated by 96 nucleotides EX28DRAFT_2365: EX28DRAFT_2365 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,386,377 to 2,387,120 _2365 EX28DRAFT_2366: EX28DRAFT_2366 - Cytotoxic translational repressor of toxin-antitoxin stability system, at 2,387,304 to 2,387,609 _2366 EX28DRAFT_2367: EX28DRAFT_2367 - Helix-turn-helix, at 2,387,581 to 2,387,985 _2367 EX28DRAFT_2368: EX28DRAFT_2368 - Uncharacterized small protein, at 2,387,982 to 2,388,179 _2368 EX28DRAFT_2369: EX28DRAFT_2369 - Carbon starvation protein, predicted membrane protein, at 2,388,276 to 2,390,381 _2369 Position (kb) 2387 2388Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2386.787 kb on + strand, within EX28DRAFT_2365at 2386.824 kb on - strand, within EX28DRAFT_2365at 2386.953 kb on - strand, within EX28DRAFT_2365at 2387.219 kb on + strandat 2387.219 kb on + strandat 2387.252 kb on - strandat 2387.261 kb on - strandat 2387.263 kb on + strandat 2387.264 kb on - strandat 2387.288 kb on + strandat 2387.288 kb on + strandat 2387.300 kb on - strandat 2387.487 kb on + strand, within EX28DRAFT_2366at 2387.489 kb on + strand, within EX28DRAFT_2366at 2387.489 kb on + strand, within EX28DRAFT_2366at 2387.490 kb on - strand, within EX28DRAFT_2366at 2387.580 kb on + strandat 2387.581 kb on - strandat 2387.588 kb on + strandat 2387.588 kb on + strandat 2387.589 kb on - strandat 2387.595 kb on - strandat 2387.623 kb on + strand, within EX28DRAFT_2367at 2387.623 kb on + strand, within EX28DRAFT_2367at 2387.624 kb on - strand, within EX28DRAFT_2367at 2387.624 kb on - strand, within EX28DRAFT_2367at 2387.624 kb on - strand, within EX28DRAFT_2367at 2387.655 kb on + strand, within EX28DRAFT_2367at 2387.655 kb on + strand, within EX28DRAFT_2367at 2387.663 kb on + strand, within EX28DRAFT_2367at 2387.663 kb on + strand, within EX28DRAFT_2367at 2387.727 kb on + strand, within EX28DRAFT_2367at 2387.759 kb on + strand, within EX28DRAFT_2367at 2387.759 kb on + strand, within EX28DRAFT_2367at 2387.760 kb on - strand, within EX28DRAFT_2367at 2387.760 kb on - strand, within EX28DRAFT_2367at 2387.760 kb on - strand, within EX28DRAFT_2367at 2387.837 kb on + strand, within EX28DRAFT_2367at 2387.936 kb on - strand, within EX28DRAFT_2367at 2388.049 kb on + strand, within EX28DRAFT_2368at 2388.049 kb on + strand, within EX28DRAFT_2368at 2388.086 kb on + strand, within EX28DRAFT_2368at 2388.086 kb on + strand, within EX28DRAFT_2368at 2388.087 kb on - strand, within EX28DRAFT_2368at 2388.097 kb on + strand, within EX28DRAFT_2368at 2388.097 kb on + strand, within EX28DRAFT_2368at 2388.106 kb on + strand, within EX28DRAFT_2368at 2388.149 kb on - strand, within EX28DRAFT_2368at 2388.151 kb on + strand, within EX28DRAFT_2368at 2388.152 kb on + strand, within EX28DRAFT_2368at 2388.152 kb on + strand, within EX28DRAFT_2368at 2388.153 kb on - strand, within EX28DRAFT_2368at 2388.153 kb on - strand, within EX28DRAFT_2368at 2388.153 kb on - strand, within EX28DRAFT_2368at 2388.179 kb on + strandat 2388.397 kb on + strandat 2388.397 kb on + strandat 2388.397 kb on + strandat 2388.398 kb on - strandat 2388.425 kb on + strandat 2388.425 kb on + strandat 2388.426 kb on - strandat 2388.426 kb on - strandat 2388.434 kb on + strandat 2388.435 kb on - strandat 2388.435 kb on - strandat 2388.750 kb on - strand, within EX28DRAFT_2369at 2388.894 kb on - strand, within EX28DRAFT_2369at 2388.894 kb on - strand, within EX28DRAFT_2369at 2388.894 kb on - strand, within EX28DRAFT_2369

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,386,787 + EX28DRAFT_2365 0.55 +0.1
2,386,824 - EX28DRAFT_2365 0.60 -0.5
2,386,953 - EX28DRAFT_2365 0.77 -0.2
2,387,219 + -0.8
2,387,219 + -1.9
2,387,252 - +0.6
2,387,261 - +0.0
2,387,263 + +1.0
2,387,264 - -1.2
2,387,288 + -1.2
2,387,288 + -0.0
2,387,300 - +0.1
2,387,487 + EX28DRAFT_2366 0.60 -1.5
2,387,489 + EX28DRAFT_2366 0.60 -0.1
2,387,489 + EX28DRAFT_2366 0.60 +0.3
2,387,490 - EX28DRAFT_2366 0.61 -0.9
2,387,580 + +1.4
2,387,581 - -1.3
2,387,588 + -0.7
2,387,588 + -1.9
2,387,589 - +0.6
2,387,595 - -0.3
2,387,623 + EX28DRAFT_2367 0.10 -0.0
2,387,623 + EX28DRAFT_2367 0.10 +0.1
2,387,624 - EX28DRAFT_2367 0.11 -0.7
2,387,624 - EX28DRAFT_2367 0.11 +0.4
2,387,624 - EX28DRAFT_2367 0.11 +1.2
2,387,655 + EX28DRAFT_2367 0.18 +0.0
2,387,655 + EX28DRAFT_2367 0.18 +0.5
2,387,663 + EX28DRAFT_2367 0.20 +0.8
2,387,663 + EX28DRAFT_2367 0.20 -0.8
2,387,727 + EX28DRAFT_2367 0.36 +1.6
2,387,759 + EX28DRAFT_2367 0.44 -0.9
2,387,759 + EX28DRAFT_2367 0.44 +0.6
2,387,760 - EX28DRAFT_2367 0.44 -0.1
2,387,760 - EX28DRAFT_2367 0.44 -0.3
2,387,760 - EX28DRAFT_2367 0.44 +0.2
2,387,837 + EX28DRAFT_2367 0.63 +0.9
2,387,936 - EX28DRAFT_2367 0.88 +0.5
2,388,049 + EX28DRAFT_2368 0.34 -2.5
2,388,049 + EX28DRAFT_2368 0.34 +0.4
2,388,086 + EX28DRAFT_2368 0.53 +0.6
2,388,086 + EX28DRAFT_2368 0.53 -2.5
2,388,087 - EX28DRAFT_2368 0.53 -0.1
2,388,097 + EX28DRAFT_2368 0.58 -3.8
2,388,097 + EX28DRAFT_2368 0.58 -1.2
2,388,106 + EX28DRAFT_2368 0.63 +0.3
2,388,149 - EX28DRAFT_2368 0.84 +0.6
2,388,151 + EX28DRAFT_2368 0.85 -0.5
2,388,152 + EX28DRAFT_2368 0.86 -2.2
2,388,152 + EX28DRAFT_2368 0.86 +0.9
2,388,153 - EX28DRAFT_2368 0.86 -0.2
2,388,153 - EX28DRAFT_2368 0.86 -0.5
2,388,153 - EX28DRAFT_2368 0.86 +0.1
2,388,179 + +0.0
2,388,397 + +0.3
2,388,397 + +0.8
2,388,397 + -1.4
2,388,398 - -4.2
2,388,425 + +0.1
2,388,425 + +0.0
2,388,426 - +1.1
2,388,426 - +0.1
2,388,434 + -0.3
2,388,435 - +0.5
2,388,435 - +0.4
2,388,750 - EX28DRAFT_2369 0.23 +0.2
2,388,894 - EX28DRAFT_2369 0.29 -0.6
2,388,894 - EX28DRAFT_2369 0.29 +0.6
2,388,894 - EX28DRAFT_2369 0.29 +0.1

Or see this region's nucleotide sequence