Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2183

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2182 and EX28DRAFT_2183 are separated by 45 nucleotidesEX28DRAFT_2183 and EX28DRAFT_2184 are separated by 243 nucleotidesEX28DRAFT_2184 and EX28DRAFT_2185 are separated by 122 nucleotides EX28DRAFT_2182: EX28DRAFT_2182 - Small-conductance mechanosensitive channel, at 2,203,925 to 2,206,138 _2182 EX28DRAFT_2183: EX28DRAFT_2183 - Predicted SAM-dependent methyltransferase, at 2,206,184 to 2,207,095 _2183 EX28DRAFT_2184: EX28DRAFT_2184 - Protein of unknown function (DUF1471), at 2,207,339 to 2,207,605 _2184 EX28DRAFT_2185: EX28DRAFT_2185 - transcriptional regulator, TraR/DksA family, at 2,207,728 to 2,207,994 _2185 Position (kb) 2206 2207 2208Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2205.241 kb on + strand, within EX28DRAFT_2182at 2205.242 kb on - strand, within EX28DRAFT_2182at 2205.608 kb on - strand, within EX28DRAFT_2182at 2205.611 kb on - strand, within EX28DRAFT_2182at 2205.611 kb on - strand, within EX28DRAFT_2182at 2205.625 kb on + strand, within EX28DRAFT_2182at 2205.626 kb on - strand, within EX28DRAFT_2182at 2205.816 kb on - strand, within EX28DRAFT_2182at 2205.845 kb on - strand, within EX28DRAFT_2182at 2205.845 kb on - strand, within EX28DRAFT_2182at 2206.082 kb on + strandat 2206.090 kb on - strandat 2206.185 kb on + strandat 2206.185 kb on + strandat 2206.186 kb on - strandat 2206.210 kb on + strandat 2206.210 kb on + strandat 2206.557 kb on + strand, within EX28DRAFT_2183at 2206.558 kb on - strand, within EX28DRAFT_2183at 2206.654 kb on + strand, within EX28DRAFT_2183at 2206.741 kb on - strand, within EX28DRAFT_2183at 2206.840 kb on - strand, within EX28DRAFT_2183at 2206.999 kb on - strand, within EX28DRAFT_2183at 2206.999 kb on - strand, within EX28DRAFT_2183at 2207.195 kb on + strandat 2207.195 kb on + strandat 2207.196 kb on - strandat 2207.262 kb on + strandat 2207.271 kb on + strandat 2207.348 kb on + strandat 2207.349 kb on - strandat 2207.446 kb on - strand, within EX28DRAFT_2184at 2207.469 kb on + strand, within EX28DRAFT_2184at 2207.569 kb on + strand, within EX28DRAFT_2184at 2207.569 kb on + strand, within EX28DRAFT_2184at 2207.575 kb on + strand, within EX28DRAFT_2184at 2207.575 kb on + strand, within EX28DRAFT_2184at 2207.575 kb on + strand, within EX28DRAFT_2184at 2207.575 kb on + strand, within EX28DRAFT_2184at 2207.575 kb on + strand, within EX28DRAFT_2184at 2207.575 kb on + strand, within EX28DRAFT_2184at 2207.576 kb on - strand, within EX28DRAFT_2184at 2207.576 kb on - strand, within EX28DRAFT_2184at 2207.576 kb on - strand, within EX28DRAFT_2184at 2207.576 kb on - strand, within EX28DRAFT_2184at 2207.580 kb on - strandat 2207.599 kb on + strandat 2207.599 kb on + strandat 2207.604 kb on - strandat 2207.604 kb on - strandat 2207.959 kb on - strand, within EX28DRAFT_2185at 2207.987 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,205,241 + EX28DRAFT_2182 0.59 -0.2
2,205,242 - EX28DRAFT_2182 0.59 -2.5
2,205,608 - EX28DRAFT_2182 0.76 -1.0
2,205,611 - EX28DRAFT_2182 0.76 -1.9
2,205,611 - EX28DRAFT_2182 0.76 +0.0
2,205,625 + EX28DRAFT_2182 0.77 -1.7
2,205,626 - EX28DRAFT_2182 0.77 -0.2
2,205,816 - EX28DRAFT_2182 0.85 -0.1
2,205,845 - EX28DRAFT_2182 0.87 -1.6
2,205,845 - EX28DRAFT_2182 0.87 -0.9
2,206,082 + -2.4
2,206,090 - -3.0
2,206,185 + +0.1
2,206,185 + -0.2
2,206,186 - +0.2
2,206,210 + -0.6
2,206,210 + -0.0
2,206,557 + EX28DRAFT_2183 0.41 -1.0
2,206,558 - EX28DRAFT_2183 0.41 +0.0
2,206,654 + EX28DRAFT_2183 0.52 +2.1
2,206,741 - EX28DRAFT_2183 0.61 +0.0
2,206,840 - EX28DRAFT_2183 0.72 +2.7
2,206,999 - EX28DRAFT_2183 0.89 +0.5
2,206,999 - EX28DRAFT_2183 0.89 -0.3
2,207,195 + +0.2
2,207,195 + +1.6
2,207,196 - +0.7
2,207,262 + +1.2
2,207,271 + -0.1
2,207,348 + +0.2
2,207,349 - +0.1
2,207,446 - EX28DRAFT_2184 0.40 +0.7
2,207,469 + EX28DRAFT_2184 0.49 -0.7
2,207,569 + EX28DRAFT_2184 0.86 -0.2
2,207,569 + EX28DRAFT_2184 0.86 +0.1
2,207,575 + EX28DRAFT_2184 0.88 -0.4
2,207,575 + EX28DRAFT_2184 0.88 +0.4
2,207,575 + EX28DRAFT_2184 0.88 +0.2
2,207,575 + EX28DRAFT_2184 0.88 +0.6
2,207,575 + EX28DRAFT_2184 0.88 +0.1
2,207,575 + EX28DRAFT_2184 0.88 +0.4
2,207,576 - EX28DRAFT_2184 0.89 -3.7
2,207,576 - EX28DRAFT_2184 0.89 -0.2
2,207,576 - EX28DRAFT_2184 0.89 -0.6
2,207,576 - EX28DRAFT_2184 0.89 +0.0
2,207,580 - +0.2
2,207,599 + +0.5
2,207,599 + -1.1
2,207,604 - -1.6
2,207,604 - +0.0
2,207,959 - EX28DRAFT_2185 0.87 -0.3
2,207,987 + -1.1

Or see this region's nucleotide sequence