Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1503

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1502 and EX28DRAFT_1503 are separated by 24 nucleotidesEX28DRAFT_1503 and EX28DRAFT_1504 are separated by 150 nucleotides EX28DRAFT_1502: EX28DRAFT_1502 - Glycine/D-amino acid oxidases (deaminating), at 1,517,187 to 1,518,467 _1502 EX28DRAFT_1503: EX28DRAFT_1503 - 4-aminobutyrate aminotransferase, prokaryotic type, at 1,518,492 to 1,519,763 _1503 EX28DRAFT_1504: EX28DRAFT_1504 - Zn-dependent carboxypeptidase, at 1,519,914 to 1,521,401 _1504 Position (kb) 1518 1519 1520Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1517.526 kb on + strand, within EX28DRAFT_1502at 1517.895 kb on + strand, within EX28DRAFT_1502at 1517.896 kb on - strand, within EX28DRAFT_1502at 1517.907 kb on - strand, within EX28DRAFT_1502at 1518.009 kb on - strand, within EX28DRAFT_1502at 1518.012 kb on + strand, within EX28DRAFT_1502at 1518.012 kb on + strand, within EX28DRAFT_1502at 1518.013 kb on - strand, within EX28DRAFT_1502at 1518.033 kb on + strand, within EX28DRAFT_1502at 1518.033 kb on + strand, within EX28DRAFT_1502at 1518.045 kb on + strand, within EX28DRAFT_1502at 1518.045 kb on + strand, within EX28DRAFT_1502at 1518.078 kb on + strand, within EX28DRAFT_1502at 1518.097 kb on - strand, within EX28DRAFT_1502at 1518.224 kb on + strand, within EX28DRAFT_1502at 1518.258 kb on + strand, within EX28DRAFT_1502at 1518.258 kb on + strand, within EX28DRAFT_1502at 1518.258 kb on + strand, within EX28DRAFT_1502at 1518.259 kb on - strand, within EX28DRAFT_1502at 1518.261 kb on + strand, within EX28DRAFT_1502at 1518.262 kb on - strand, within EX28DRAFT_1502at 1518.262 kb on - strand, within EX28DRAFT_1502at 1518.262 kb on - strand, within EX28DRAFT_1502at 1518.616 kb on - strandat 1518.618 kb on - strandat 1518.744 kb on + strand, within EX28DRAFT_1503at 1518.915 kb on + strand, within EX28DRAFT_1503at 1518.915 kb on + strand, within EX28DRAFT_1503at 1518.915 kb on + strand, within EX28DRAFT_1503at 1518.915 kb on + strand, within EX28DRAFT_1503at 1518.916 kb on - strand, within EX28DRAFT_1503at 1518.916 kb on - strand, within EX28DRAFT_1503at 1518.917 kb on + strand, within EX28DRAFT_1503at 1518.918 kb on - strand, within EX28DRAFT_1503at 1518.954 kb on - strand, within EX28DRAFT_1503at 1518.988 kb on - strand, within EX28DRAFT_1503at 1519.381 kb on - strand, within EX28DRAFT_1503at 1519.427 kb on + strand, within EX28DRAFT_1503at 1519.427 kb on + strand, within EX28DRAFT_1503at 1519.428 kb on - strand, within EX28DRAFT_1503at 1519.428 kb on - strand, within EX28DRAFT_1503at 1519.745 kb on + strandat 1519.762 kb on - strandat 1519.762 kb on - strandat 1519.762 kb on - strandat 1519.762 kb on - strandat 1519.824 kb on + strandat 1519.825 kb on - strandat 1519.873 kb on + strandat 1519.874 kb on - strandat 1520.662 kb on - strand, within EX28DRAFT_1504

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,517,526 + EX28DRAFT_1502 0.26 -0.2
1,517,895 + EX28DRAFT_1502 0.55 +0.4
1,517,896 - EX28DRAFT_1502 0.55 -0.7
1,517,907 - EX28DRAFT_1502 0.56 -1.0
1,518,009 - EX28DRAFT_1502 0.64 +1.1
1,518,012 + EX28DRAFT_1502 0.64 +1.6
1,518,012 + EX28DRAFT_1502 0.64 +0.0
1,518,013 - EX28DRAFT_1502 0.64 -0.1
1,518,033 + EX28DRAFT_1502 0.66 +1.6
1,518,033 + EX28DRAFT_1502 0.66 -0.2
1,518,045 + EX28DRAFT_1502 0.67 +0.6
1,518,045 + EX28DRAFT_1502 0.67 -2.5
1,518,078 + EX28DRAFT_1502 0.70 -0.2
1,518,097 - EX28DRAFT_1502 0.71 -0.4
1,518,224 + EX28DRAFT_1502 0.81 +1.1
1,518,258 + EX28DRAFT_1502 0.84 -3.3
1,518,258 + EX28DRAFT_1502 0.84 -0.4
1,518,258 + EX28DRAFT_1502 0.84 +0.0
1,518,259 - EX28DRAFT_1502 0.84 +0.2
1,518,261 + EX28DRAFT_1502 0.84 -0.4
1,518,262 - EX28DRAFT_1502 0.84 -0.5
1,518,262 - EX28DRAFT_1502 0.84 +0.3
1,518,262 - EX28DRAFT_1502 0.84 -0.1
1,518,616 - +0.2
1,518,618 - -1.2
1,518,744 + EX28DRAFT_1503 0.20 +1.2
1,518,915 + EX28DRAFT_1503 0.33 -3.8
1,518,915 + EX28DRAFT_1503 0.33 -1.0
1,518,915 + EX28DRAFT_1503 0.33 +0.1
1,518,915 + EX28DRAFT_1503 0.33 +0.1
1,518,916 - EX28DRAFT_1503 0.33 -0.1
1,518,916 - EX28DRAFT_1503 0.33 +0.1
1,518,917 + EX28DRAFT_1503 0.33 +0.7
1,518,918 - EX28DRAFT_1503 0.33 +0.1
1,518,954 - EX28DRAFT_1503 0.36 -0.0
1,518,988 - EX28DRAFT_1503 0.39 -1.3
1,519,381 - EX28DRAFT_1503 0.70 -0.6
1,519,427 + EX28DRAFT_1503 0.74 -0.2
1,519,427 + EX28DRAFT_1503 0.74 -2.3
1,519,428 - EX28DRAFT_1503 0.74 -2.3
1,519,428 - EX28DRAFT_1503 0.74 +0.6
1,519,745 + +0.8
1,519,762 - -0.7
1,519,762 - -2.3
1,519,762 - +4.0
1,519,762 - +0.8
1,519,824 + -3.3
1,519,825 - +1.4
1,519,873 + -0.6
1,519,874 - -0.9
1,520,662 - EX28DRAFT_1504 0.50 +0.3

Or see this region's nucleotide sequence