Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1346

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1345 and EX28DRAFT_1346 are separated by 121 nucleotidesEX28DRAFT_1346 and EX28DRAFT_1347 are separated by 739 nucleotides EX28DRAFT_1345: EX28DRAFT_1345 - Bacterial Ig-like domain (group 3)/Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella/Putative flagellar system-associated repeat, at 1,341,355 to 1,359,360 _1345 EX28DRAFT_1346: EX28DRAFT_1346 - type I secretion outer membrane protein, TolC family, at 1,359,482 to 1,360,819 _1346 EX28DRAFT_1347: EX28DRAFT_1347 - transcriptional regulator, DeoR family, at 1,361,559 to 1,362,302 _1347 Position (kb) 1359 1360 1361Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1358.569 kb on - strandat 1358.647 kb on + strandat 1358.647 kb on + strandat 1358.648 kb on - strandat 1359.009 kb on + strandat 1359.082 kb on - strandat 1359.082 kb on - strandat 1359.152 kb on + strandat 1359.187 kb on - strandat 1359.189 kb on - strandat 1359.415 kb on + strandat 1359.415 kb on + strandat 1359.416 kb on - strandat 1359.416 kb on - strandat 1359.416 kb on - strandat 1359.416 kb on - strandat 1359.566 kb on - strandat 1359.588 kb on + strandat 1359.600 kb on - strandat 1359.675 kb on + strand, within EX28DRAFT_1346at 1359.685 kb on + strand, within EX28DRAFT_1346at 1359.686 kb on - strand, within EX28DRAFT_1346at 1359.908 kb on + strand, within EX28DRAFT_1346at 1359.909 kb on - strand, within EX28DRAFT_1346at 1360.011 kb on + strand, within EX28DRAFT_1346at 1360.059 kb on - strand, within EX28DRAFT_1346at 1360.065 kb on + strand, within EX28DRAFT_1346at 1360.065 kb on + strand, within EX28DRAFT_1346at 1360.066 kb on - strand, within EX28DRAFT_1346at 1360.073 kb on - strand, within EX28DRAFT_1346at 1360.073 kb on - strand, within EX28DRAFT_1346at 1360.188 kb on + strand, within EX28DRAFT_1346at 1360.311 kb on - strand, within EX28DRAFT_1346at 1360.362 kb on + strand, within EX28DRAFT_1346at 1360.363 kb on - strand, within EX28DRAFT_1346at 1360.363 kb on - strand, within EX28DRAFT_1346at 1360.575 kb on - strand, within EX28DRAFT_1346at 1360.625 kb on - strand, within EX28DRAFT_1346at 1360.628 kb on + strand, within EX28DRAFT_1346at 1360.718 kb on - strandat 1360.730 kb on - strandat 1360.733 kb on - strandat 1360.869 kb on + strandat 1360.896 kb on + strandat 1360.897 kb on - strandat 1360.996 kb on + strandat 1361.128 kb on - strandat 1361.351 kb on - strandat 1361.419 kb on + strandat 1361.420 kb on - strandat 1361.583 kb on + strandat 1361.583 kb on + strandat 1361.584 kb on - strandat 1361.584 kb on - strandat 1361.660 kb on + strand, within EX28DRAFT_1347

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,358,569 - -0.4
1,358,647 + -0.3
1,358,647 + +1.1
1,358,648 - +1.1
1,359,009 + +0.3
1,359,082 - +0.4
1,359,082 - -0.9
1,359,152 + +1.1
1,359,187 - -2.5
1,359,189 - +0.4
1,359,415 + +0.7
1,359,415 + +1.4
1,359,416 - -0.5
1,359,416 - +0.0
1,359,416 - +0.3
1,359,416 - +0.9
1,359,566 - -0.5
1,359,588 + +0.4
1,359,600 - -0.7
1,359,675 + EX28DRAFT_1346 0.14 -4.0
1,359,685 + EX28DRAFT_1346 0.15 +0.3
1,359,686 - EX28DRAFT_1346 0.15 +0.2
1,359,908 + EX28DRAFT_1346 0.32 -0.5
1,359,909 - EX28DRAFT_1346 0.32 -0.7
1,360,011 + EX28DRAFT_1346 0.40 +0.2
1,360,059 - EX28DRAFT_1346 0.43 +1.1
1,360,065 + EX28DRAFT_1346 0.44 +0.5
1,360,065 + EX28DRAFT_1346 0.44 +2.1
1,360,066 - EX28DRAFT_1346 0.44 +0.5
1,360,073 - EX28DRAFT_1346 0.44 +0.8
1,360,073 - EX28DRAFT_1346 0.44 -0.5
1,360,188 + EX28DRAFT_1346 0.53 +0.9
1,360,311 - EX28DRAFT_1346 0.62 +0.9
1,360,362 + EX28DRAFT_1346 0.66 -4.2
1,360,363 - EX28DRAFT_1346 0.66 +1.6
1,360,363 - EX28DRAFT_1346 0.66 +1.3
1,360,575 - EX28DRAFT_1346 0.82 +0.6
1,360,625 - EX28DRAFT_1346 0.85 -0.8
1,360,628 + EX28DRAFT_1346 0.86 +1.2
1,360,718 - -0.6
1,360,730 - +0.0
1,360,733 - -1.5
1,360,869 + -0.8
1,360,896 + -0.7
1,360,897 - -0.1
1,360,996 + +0.7
1,361,128 - -0.7
1,361,351 - +0.1
1,361,419 + +0.0
1,361,420 - +0.6
1,361,583 + +0.8
1,361,583 + +0.9
1,361,584 - -1.5
1,361,584 - +1.6
1,361,660 + EX28DRAFT_1347 0.14 -0.8

Or see this region's nucleotide sequence