Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1193

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1191 and EX28DRAFT_1192 are separated by 116 nucleotidesEX28DRAFT_1192 and EX28DRAFT_1193 are separated by 82 nucleotidesEX28DRAFT_1193 and EX28DRAFT_1194 are separated by 119 nucleotides EX28DRAFT_1191: EX28DRAFT_1191 - Mannitol-1-phosphate/altronate dehydrogenases, at 1,210,390 to 1,211,841 _1191 EX28DRAFT_1192: EX28DRAFT_1192 - Acetyltransferase (GNAT) family, at 1,211,958 to 1,212,485 _1192 EX28DRAFT_1193: EX28DRAFT_1193 - diguanylate cyclase (GGDEF) domain, at 1,212,568 to 1,213,533 _1193 EX28DRAFT_1194: EX28DRAFT_1194 - diguanylate cyclase (GGDEF) domain, at 1,213,653 to 1,215,092 _1194 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1211.593 kb on + strand, within EX28DRAFT_1191at 1211.634 kb on + strand, within EX28DRAFT_1191at 1211.634 kb on + strand, within EX28DRAFT_1191at 1211.634 kb on + strand, within EX28DRAFT_1191at 1211.635 kb on - strand, within EX28DRAFT_1191at 1211.637 kb on - strand, within EX28DRAFT_1191at 1211.637 kb on - strand, within EX28DRAFT_1191at 1211.718 kb on + strandat 1211.729 kb on - strandat 1211.942 kb on + strandat 1211.943 kb on - strandat 1211.943 kb on - strandat 1211.949 kb on - strandat 1211.956 kb on - strandat 1211.956 kb on - strandat 1211.962 kb on - strandat 1211.962 kb on - strandat 1211.969 kb on + strandat 1211.970 kb on - strandat 1211.971 kb on + strandat 1211.971 kb on + strandat 1211.971 kb on + strandat 1211.971 kb on + strandat 1212.016 kb on + strand, within EX28DRAFT_1192at 1212.033 kb on + strand, within EX28DRAFT_1192at 1212.059 kb on - strand, within EX28DRAFT_1192at 1212.110 kb on + strand, within EX28DRAFT_1192at 1212.110 kb on + strand, within EX28DRAFT_1192at 1212.313 kb on - strand, within EX28DRAFT_1192at 1212.360 kb on - strand, within EX28DRAFT_1192at 1212.372 kb on - strand, within EX28DRAFT_1192at 1212.479 kb on + strandat 1212.479 kb on + strandat 1212.480 kb on - strandat 1212.480 kb on - strandat 1212.523 kb on - strandat 1212.553 kb on + strandat 1212.553 kb on + strandat 1212.554 kb on - strandat 1212.554 kb on - strandat 1212.564 kb on + strandat 1212.603 kb on - strandat 1212.716 kb on + strand, within EX28DRAFT_1193at 1212.717 kb on - strand, within EX28DRAFT_1193at 1212.717 kb on - strand, within EX28DRAFT_1193at 1212.717 kb on - strand, within EX28DRAFT_1193at 1212.740 kb on + strand, within EX28DRAFT_1193at 1212.906 kb on + strand, within EX28DRAFT_1193at 1213.296 kb on + strand, within EX28DRAFT_1193at 1213.315 kb on - strand, within EX28DRAFT_1193at 1213.534 kb on - strandat 1213.608 kb on - strandat 1213.636 kb on + strandat 1213.654 kb on + strandat 1213.654 kb on + strandat 1213.654 kb on + strandat 1213.654 kb on + strandat 1213.655 kb on - strandat 1213.655 kb on - strandat 1213.837 kb on + strand, within EX28DRAFT_1194at 1213.890 kb on - strand, within EX28DRAFT_1194at 1214.047 kb on + strand, within EX28DRAFT_1194at 1214.047 kb on + strand, within EX28DRAFT_1194at 1214.051 kb on + strand, within EX28DRAFT_1194at 1214.051 kb on + strand, within EX28DRAFT_1194at 1214.051 kb on + strand, within EX28DRAFT_1194at 1214.051 kb on + strand, within EX28DRAFT_1194at 1214.052 kb on - strand, within EX28DRAFT_1194at 1214.052 kb on - strand, within EX28DRAFT_1194at 1214.058 kb on - strand, within EX28DRAFT_1194at 1214.079 kb on - strand, within EX28DRAFT_1194at 1214.143 kb on + strand, within EX28DRAFT_1194at 1214.144 kb on - strand, within EX28DRAFT_1194at 1214.183 kb on - strand, within EX28DRAFT_1194at 1214.219 kb on + strand, within EX28DRAFT_1194at 1214.327 kb on + strand, within EX28DRAFT_1194at 1214.327 kb on + strand, within EX28DRAFT_1194at 1214.328 kb on - strand, within EX28DRAFT_1194at 1214.331 kb on - strand, within EX28DRAFT_1194at 1214.427 kb on - strand, within EX28DRAFT_1194at 1214.529 kb on + strand, within EX28DRAFT_1194at 1214.530 kb on - strand, within EX28DRAFT_1194

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,211,593 + EX28DRAFT_1191 0.83 +0.8
1,211,634 + EX28DRAFT_1191 0.86 +0.3
1,211,634 + EX28DRAFT_1191 0.86 +1.2
1,211,634 + EX28DRAFT_1191 0.86 +0.5
1,211,635 - EX28DRAFT_1191 0.86 +0.9
1,211,637 - EX28DRAFT_1191 0.86 -0.8
1,211,637 - EX28DRAFT_1191 0.86 +0.8
1,211,718 + +1.2
1,211,729 - +0.5
1,211,942 + -1.7
1,211,943 - -0.1
1,211,943 - +0.2
1,211,949 - +0.2
1,211,956 - -0.1
1,211,956 - +0.7
1,211,962 - +0.4
1,211,962 - +0.5
1,211,969 + +0.6
1,211,970 - -0.4
1,211,971 + +0.5
1,211,971 + -0.5
1,211,971 + +1.3
1,211,971 + -0.0
1,212,016 + EX28DRAFT_1192 0.11 -0.4
1,212,033 + EX28DRAFT_1192 0.14 +0.3
1,212,059 - EX28DRAFT_1192 0.19 -0.9
1,212,110 + EX28DRAFT_1192 0.29 +0.6
1,212,110 + EX28DRAFT_1192 0.29 +0.6
1,212,313 - EX28DRAFT_1192 0.67 +1.8
1,212,360 - EX28DRAFT_1192 0.76 -1.9
1,212,372 - EX28DRAFT_1192 0.78 -4.3
1,212,479 + +0.6
1,212,479 + +0.1
1,212,480 - -0.8
1,212,480 - +0.0
1,212,523 - -1.0
1,212,553 + -1.1
1,212,553 + +1.0
1,212,554 - -1.3
1,212,554 - -0.2
1,212,564 + +1.0
1,212,603 - -1.0
1,212,716 + EX28DRAFT_1193 0.15 -0.8
1,212,717 - EX28DRAFT_1193 0.15 +2.1
1,212,717 - EX28DRAFT_1193 0.15 +2.3
1,212,717 - EX28DRAFT_1193 0.15 +0.6
1,212,740 + EX28DRAFT_1193 0.18 +2.9
1,212,906 + EX28DRAFT_1193 0.35 +0.6
1,213,296 + EX28DRAFT_1193 0.75 +1.4
1,213,315 - EX28DRAFT_1193 0.77 +1.3
1,213,534 - +1.6
1,213,608 - +0.7
1,213,636 + +0.2
1,213,654 + +0.8
1,213,654 + +0.9
1,213,654 + +0.4
1,213,654 + -0.2
1,213,655 - +0.9
1,213,655 - +0.6
1,213,837 + EX28DRAFT_1194 0.13 +1.4
1,213,890 - EX28DRAFT_1194 0.16 -0.5
1,214,047 + EX28DRAFT_1194 0.27 -0.8
1,214,047 + EX28DRAFT_1194 0.27 +0.1
1,214,051 + EX28DRAFT_1194 0.28 -0.4
1,214,051 + EX28DRAFT_1194 0.28 +0.5
1,214,051 + EX28DRAFT_1194 0.28 +1.8
1,214,051 + EX28DRAFT_1194 0.28 -0.5
1,214,052 - EX28DRAFT_1194 0.28 -0.3
1,214,052 - EX28DRAFT_1194 0.28 +1.1
1,214,058 - EX28DRAFT_1194 0.28 -0.4
1,214,079 - EX28DRAFT_1194 0.30 -2.0
1,214,143 + EX28DRAFT_1194 0.34 -1.2
1,214,144 - EX28DRAFT_1194 0.34 -0.5
1,214,183 - EX28DRAFT_1194 0.37 +0.1
1,214,219 + EX28DRAFT_1194 0.39 -0.9
1,214,327 + EX28DRAFT_1194 0.47 -0.5
1,214,327 + EX28DRAFT_1194 0.47 -1.9
1,214,328 - EX28DRAFT_1194 0.47 +1.1
1,214,331 - EX28DRAFT_1194 0.47 -0.5
1,214,427 - EX28DRAFT_1194 0.54 -0.5
1,214,529 + EX28DRAFT_1194 0.61 +0.3
1,214,530 - EX28DRAFT_1194 0.61 -0.5

Or see this region's nucleotide sequence